PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188249.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 507aa    MW: 56997.8 Da    PI: 5.1253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2806.8e-861345051374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilk 92 
                     lv+lLl++ e vs ++++la+ +++r   +as +g+p+qRla+ f+eAL +r+ r  ++ ++ ++ ++ ++ ++s +l+   +    ++  P+ +
  XP_019188249.1 134 LVHLLLAAGEEVSRRQFHLATGFISRCLWTASDSGTPVQRLAFQFAEALTERIER-ETGRFRGVNEERLARCRESMALSCNPAilaSHQGLPFGQ 227
                     689****************************************************.44444455544444444333333333344478899**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     + +++  qaI e v++++++H +D++i  G+QW  L+qaLa++ +++p  ++R+T++g+    ++e++ee g+rL++fA++l++pf+f+++  ++
  XP_019188249.1 228 LIQFAGIQAIIERVKNARKIHLVDINIRSGIQWTILMQALAEQHGSSPieRIRLTAIGA---AEREKMEECGKRLQSFADSLNLPFRFDTVFLSD 319
                     ********************************************8887779********...579****************************** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     l+d++ + ++v+++E++aV   + l ++ +++ +l+     +++ +k+l+P+v+vv+e ea+hns+sF +rf+eal ++ a fd+le  l re+ 
  XP_019188249.1 320 LKDFSEDLIQVEEDEVVAVLANIVLRTMIARPDCLDG----LMRGIKRLRPTVMVVAEVEANHNSPSFINRFVEALFFFGAYFDCLEDCLDREDP 410
                     ****************************977777776....****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+++E   +g+ i+n+va+eg+er+ r+ + e Wr+ + ++G+ +++lse+ + qa+l+ ++++ ++  +++++ + l++gWk+ p+ sv++W+
  XP_019188249.1 411 CRRTIEGLHFGEGIRNMVAAEGDERFTRNVKIEVWRAYFARFGMAEMQLSESSVYQANLVGKQFGdGNSCTLDSSGKGLIIGWKGTPMHSVTCWK 505
                     *****************************************************************88889999*********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MEECDDDFDS LFAGAKKIEH LIEDQNQMPL ASPNNPEVSE PKLPHQTTPF SSASFEILKC  60
YGRFFEDRSS RLTSETDRLD VAGGKLSVAE ILRLAGERYI QFFTQKADGF SAFFHPYASA  120
LSGISVDDIR DVELVHLLLA AGEEVSRRQF HLATGFISRC LWTASDSGTP VQRLAFQFAE  180
ALTERIERET GRFRGVNEER LARCRESMAL SCNPAILASH QGLPFGQLIQ FAGIQAIIER  240
VKNARKIHLV DINIRSGIQW TILMQALAEQ HGSSPIERIR LTAIGAAERE KMEECGKRLQ  300
SFADSLNLPF RFDTVFLSDL KDFSEDLIQV EEDEVVAVLA NIVLRTMIAR PDCLDGLMRG  360
IKRLRPTVMV VAEVEANHNS PSFINRFVEA LFFFGAYFDC LEDCLDREDP CRRTIEGLHF  420
GEGIRNMVAA EGDERFTRNV KIEVWRAYFA RFGMAEMQLS ESSVYQANLV GKQFGDGNSC  480
TLDSSGKGLI IGWKGTPMHS VTCWKFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-55GRAS family protein