PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188248.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 538aa    MW: 60722.8 Da    PI: 5.6911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.82.4e-871655361374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilk 92 
                     lv+lLl++ e vs ++++la+ +++r + +as +g+p+qRla+ f+eAL +r+ r++ +     + + +++++s   +    +    ++  P+ +
  XP_019188248.1 165 LVHLLLAAGEEVSRRQFHLATGFISRCRWTASDSGTPVQRLAFQFAEALTERIERETGRFRGMSEERLARRRESMALTCTP-AtlaSHQGLPFSQ 258
                     689****************************************************54444443344444433322222222.133478999**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     + +++  qaI e v++++++H +D++i  G+QW  L+qaLa++ +++p  ++R+T++gs    ++e++ee g+rL++fA++l++pf+f+++  ++
  XP_019188248.1 259 VIQFAGIQAIIERVKNARKIHLVDINIRSGIQWTILMQALAEQHGSSPieRIRLTAIGS---AEREKMEECGKRLQSFADSLNLPFRFDTVFLSD 350
                     ********************************************8887779********...579****************************** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     l+d++ + ++v+ +E++aV   + l ++ +++ +l+     +++ +++l+P v+v++e ea+hns+sF +rf+eal +y a fd+le  l r++ 
  XP_019188248.1 351 LKDFREDLIQVEDEEVVAVLANIVLRTMIARPDCLDG----LMRGIRRLRPAVMVMAEVEANHNSPSFINRFVEALFFYGAYFDCLEDCLDRDDP 441
                     ****************************977777776....****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+++E   +g+ i+n+va+eg+er+ r  + e Wr+ + ++G+ +++lse+ + qa+l+ ++++ ++  +++++ + l++gWk+ p+ sv++W+
  XP_019188248.1 442 CRRTLEGLHFGEGIRNLVAAEGEERFTRSVKIEVWRAYFARFGMAEMQLSESSVYQANLVGKQFGnGNSCTLDSSGKGLIIGWKGTPIHSVTCWK 536
                     *****************************************************************88889999*********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MTTVSFPSAP FNHDRHLHRK GSVNDELSSS KDDNNDWFEM EECDDDFDSL YAGAKRIEDP  60
IEDQNQMPLA SPNPQVPETP FSSASFEILK CYGRFFKDRS SRLTSKTDRL EVAGGKLSVA  120
EILRLAGERC IQFFTQKADG FSAFFHPYAS ALSGISVDDI RDVELVHLLL AAGEEVSRRQ  180
FHLATGFISR CRWTASDSGT PVQRLAFQFA EALTERIERE TGRFRGMSEE RLARRRESMA  240
LTCTPATLAS HQGLPFSQVI QFAGIQAIIE RVKNARKIHL VDINIRSGIQ WTILMQALAE  300
QHGSSPIERI RLTAIGSAER EKMEECGKRL QSFADSLNLP FRFDTVFLSD LKDFREDLIQ  360
VEDEEVVAVL ANIVLRTMIA RPDCLDGLMR GIRRLRPAVM VMAEVEANHN SPSFINRFVE  420
ALFFYGAYFD CLEDCLDRDD PCRRTLEGLH FGEGIRNLVA AEGEERFTRS VKIEVWRAYF  480
ARFGMAEMQL SESSVYQANL VGKQFGNGNS CTLDSSGKGL IIGWKGTPIH SVTCWKFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-55GRAS family protein