PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019187541.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 485aa    MW: 54869.8 Da    PI: 4.8244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019187541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS150.12.1e-461244842373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL + Aea+++g++ela+ +++ +   ++p g+p++R+a+ +         +         p+++ ++++s +  aa+ +f+++ P+ +f+h+
  XP_019187541.1 124 HHLLEAYAEAIEDGHKELAEVIVKCVTGKVNPLGEPIERVAFNLF--------H---------PSEDLQKESSNNFEAAFMAFYQILPYGRFAHF 201
                     6899999**********************************9643........3.........2333333345666778889************* PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +aN+aIlea+ ++ erv i+Dfd+++G+QWp+L++a+  Rp    sl++  ++ ++ +    s+ + e+t++rL + A+++g +++ + +   ++
  XP_019187541.1 202 AANSAILEALPSSaERVTIVDFDMGEGIQWPPLIEAMGPRPI---SLKLISIKTEQGSiatsSRWRFENTRRRLYDHARQCGQKLQVEEM---TI 290
                     **********9988*************************965...57777777766556777999**********************997...56 PP

            GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsl 271
                     e+l +e+  ++ ++  la n++++l ++ +++  ++    e+Lk+ k+l       + +vv+++ e   +  +s+ +   f + + +y +l +s+
  XP_019187541.1 291 EELVTETKrSTGKQQWLAFNCMFRLPHMTKKQPRSQA--MEFLKIAKELlsssaiPSGIVVFADGEprGNGdSSPGYTSSFNNQFIHYKSLIESM 383
                     666444431455699*************966666655..89999999873222214569*****995544446679******************* PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWk 363
                     e+ +p +  e+ri +E +++++ i++    +  +    + + +  ++ + e G++  +ls ++  qak l+++ +     r+e +++++++l W+
  XP_019187541.1 384 ESYFPVNLaEARIALESHFFSPFICSTSWFQDWQ----ESKIKGTSNLMAETGLQGRKLSMENLIQAKVLVSEREtAYKVRIEeQKQHEMILEWR 474
                     *****9877****************998888887....66777889*****************************4444555545689999**** PP

            GRAS 364 drpLvsvSaW 373
                     + pL+ vS W
  XP_019187541.1 475 GTPLMGVSTW 484
                     ********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MMQSFAGHNV QFSTSLFCGL YDETYPRENY THSSTVTTTD SSDSSLYSSF EALFPDAFTE  60
LTSLQNDTAM DHLESREFED FWQWLNNSDQ PKGDMWSPSL SVVSSEASMV PGTGMEVDGL  120
TSLHHLLEAY AEAIEDGHKE LAEVIVKCVT GKVNPLGEPI ERVAFNLFHP SEDLQKESSN  180
NFEAAFMAFY QILPYGRFAH FAANSAILEA LPSSAERVTI VDFDMGEGIQ WPPLIEAMGP  240
RPISLKLISI KTEQGSIATS SRWRFENTRR RLYDHARQCG QKLQVEEMTI EELVTETKRS  300
TGKQQWLAFN CMFRLPHMTK KQPRSQAMEF LKIAKELLSS SAIPSGIVVF ADGEPRGNGD  360
SSPGYTSSFN NQFIHYKSLI ESMESYFPVN LAEARIALES HFFSPFICST SWFQDWQESK  420
IKGTSNLMAE TGLQGRKLSM ENLIQAKVLV SERETAYKVR IEEQKQHEMI LEWRGTPLMG  480
VSTWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-21GRAS family protein