PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187393.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 426aa MW: 47766.8 Da PI: 4.8717

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.6	1.1e-16	73	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse...ng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p++ + kr +rf+lg+f ta e a a++ a++ ++g XP_019187393.1 73 CSYRGVRQRT-WGKWVAEIREPVSratDEcnsKRhrRRFWLGTFSTAVEGALAYDMAARVMYG 134 67***999.******777565115664457********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MAYSGSRKTR KRRNGSESVE EMLLRWKALN NEAASSNSNG TPLDGARKKR KFQANGSRKG 60 CMRGKGGPEN SGCSYRGVRQ RTWGKWVAEI REPVSRATDE CNSKRHRRRF WLGTFSTAVE 120 GALAYDMAAR VMYGPDAILN FPDAFLQNKN ASGGGLRLNC EGESSAASVN NDVPKVKVFG 180 SQLKLSDECI AEGNGEVLDL ISVSKPMEPY ILERHDSCSP IFSIEESKSR IVPKAQKSNV 240 LIRNDSSSST GESRVVSIVK ELEDLVEKVN DDIAELEDSK QLFNGSNEAN ISCNVDAGMQ 300 NIETKVDDAE ERRLDFNCSE YERSNDKRFS QDENRDSDEP KPELQSQLDY FLKILLEDNH 360 STENMNISET FSLMENHEGS DFFMKLLKQS FSKDPILELN TDDSEVKQDG EDEPSNHSTV 420 VDYTRN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MAYSGSRKTR KRRNGSESVE EMLLRWKALN NEAASSNSNG TPLDGARKKR KFQANGSRKG  60
CMRGKGGPEN SGCSYRGVRQ RTWGKWVAEI REPVSRATDE CNSKRHRRRF WLGTFSTAVE  120
GALAYDMAAR VMYGPDAILN FPDAFLQNKN ASGGGLRLNC EGESSAASVN NDVPKVKVFG  180
SQLKLSDECI AEGNGEVLDL ISVSKPMEPY ILERHDSCSP IFSIEESKSR IVPKAQKSNV  240
LIRNDSSSST GESRVVSIVK ELEDLVEKVN DDIAELEDSK QLFNGSNEAN ISCNVDAGMQ  300
NIETKVDDAE ERRLDFNCSE YERSNDKRFS QDENRDSDEP KPELQSQLDY FLKILLEDNH  360
STENMNISET FSLMENHEGS DFFMKLLKQS FSKDPILELN TDDSEVKQDG EDEPSNHSTV  420
VDYTRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	51	RKTRKRRNGSESVEEMLLRWKALNNEAASSNSNGTPLDGARKKRK
2	10	54	RKTRKRRNGSESVEEMLLRWKALNNEAASSNSNGTPLDGARKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38340.1	9e-36	ERF family protein