PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186693.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 290aa MW: 32181.5 Da PI: 8.3038

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	228	250	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+++Fs+ +L+ H ++ H XP_019186693.1 228 QCPQCNTRFSSVVDLVDHVQNvH 250 7*****************99888 PP
2	zf-C2H2	12.4	0.00047	262	284	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp C+k F ++ +L+ H + H XP_019186693.1 262 ICPRCSKGFHDPVSLVEHVEReH 284 5*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGTPALPNLG KHCSVDDCRQ IDFLPFTCDC CQKVFCLEHR SYLRHHCPKA NKNDVTVVVC 60 PLCAKGVHLI PDEDPNVTWE SHVNIDCDPS NYETSTKKRK CPVPGCKELL TFSNTIKCRE 120 CNLDHCLKHR FGPDHKCPGP RKPETSFPFM GYLSKSRKDE TKHAPATSSS SWTATFLGAT 180 SSVRAKAGAG MAKLSTEFNQ ALQKGKDRGS LNSRATRQAG NASGNVEQCP QCNTRFSSVV 240 DLVDHVQNVH ERKSVTNLAV DICPRCSKGF HDPVSLVEHV EREHRNFTSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-116	C2H2 family protein