PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019186570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 20022.4 Da PI: 10.2971 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.2 | 3.6e-12 | 10 | 47 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i n +r+ t+ kR+n +lKK +EL +LC++++a+i++ XP_019186570.1 10 IVNGFKRKATYKKRKNEMLKKLNELTILCGVDAAIIMY 47 668889******************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MARRLRLAYI VNGFKRKATY KKRKNEMLKK LNELTILCGV DAAIIMYISF ESGPVIWPSA 60 GEVQQRITRF MNLPHVEQTQ RMMSPESFVE ERIQKLNTRL LKVKKDNRER EMDALMHKII 120 TGERTINSLR VIDQNDLDWV LTTNLVKIDN MAEEIMRHSS TIASSDFAPA QL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-30 | M-type_MADS family protein |