PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185515.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 494aa MW: 55535.4 Da PI: 6.4373

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.6	7.3e-21	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++s+v++ ++ lp +f++++ + +++t+++e+e+g+++e+k+i +k++ l++GW++Fv a++L egD+++F+l+g ++f +v XP_019185515.1 137 FLKLLVRSHVGSCFWMGLPVPFCKKYLSR--KDTTVVVENENGEEFEIKYIAEKTG----LSAGWRKFVAAHKLVEGDVLIFQLTGPDRF--KVY 223 89**********************655..6779***********777777....**********************998888..888 PP EE-S CS B3 96 vfrk 99 v+r+ XP_019185515.1 224 VIRT 227 8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MKIKVVLNQE NRGDPDMPKK EIVEDERAEP EEEDATRDPN EENLSLVNIP NSSPSPLNSY 60 PQHLGKRKRK PKEMIDEISP LVLSRKRKKK LQPSAAQSSH EGPGGKGKSP SPLQVKSPTL 120 IRAEEVQSSL GQEYPTFLKL LVRSHVGSCF WMGLPVPFCK KYLSRKDTTV VVENENGEEF 180 EIKYIAEKTG LSAGWRKFVA AHKLVEGDVL IFQLTGPDRF KVYVIRTNDL TDVDGALSLL 240 NLEVLTKQSD AAAEATNPNN KRKKRQKSLP LTVVQRKKHK AQLVQLEEQS GNDSDEVASE 300 VFEGSKALTL AASFGDVKSF EDFTIVVNGV CLDSEIPDHI RRKYYELCCS KNAFLHDRLL 360 SGLYGQLIAG MIFEVVSIAD AIRACKLTTA RTEFEVWDKS LKSFELLGMN VGFLRDRVRQ 420 LLNLAFESEG ASDAKRYWEA KTGLARSEEE IKTIEIKLVE LKEASKVYSA DIEALRSKAE 480 SFEIMFDEEI NAPW

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MKIKVVLNQE NRGDPDMPKK EIVEDERAEP EEEDATRDPN EENLSLVNIP NSSPSPLNSY  60
PQHLGKRKRK PKEMIDEISP LVLSRKRKKK LQPSAAQSSH EGPGGKGKSP SPLQVKSPTL  120
IRAEEVQSSL GQEYPTFLKL LVRSHVGSCF WMGLPVPFCK KYLSRKDTTV VVENENGEEF  180
EIKYIAEKTG LSAGWRKFVA AHKLVEGDVL IFQLTGPDRF KVYVIRTNDL TDVDGALSLL  240
NLEVLTKQSD AAAEATNPNN KRKKRQKSLP LTVVQRKKHK AQLVQLEEQS GNDSDEVASE  300
VFEGSKALTL AASFGDVKSF EDFTIVVNGV CLDSEIPDHI RRKYYELCCS KNAFLHDRLL  360
SGLYGQLIAG MIFEVVSIAD AIRACKLTTA RTEFEVWDKS LKSFELLGMN VGFLRDRVRQ  420
LLNLAFESEG ASDAKRYWEA KTGLARSEEE IKTIEIKLVE LKEASKVYSA DIEALRSKAE  480
SFEIMFDEEI NAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	88	KRKRKPKEMIDEISPLVLSRKRK
2	66	90	KRKRKPKEMIDEISPLVLSRKRKKK
3	67	89	KRKRKPKEMIDEISPLVLSRKRK
4	68	90	KRKPKEMIDEISPLVLSRKRKKK
5	68	90	KRKRKPKEMIDEISPLVLSRKRK
6	85	89	RKRKK
7	261	278	KRKKRQKSLPLTVVQRKK
8	261	285	KRKRKPKEMIDEISPLVLSRKRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-33	B3 family protein