PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185417.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 567aa    MW: 61616.5 Da    PI: 5.7117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.81.3e-1391955581374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++la+al++++  la +++ +m+++a+yf+eALa+r+++        + p++t e++ +++l++   f+e++P+lkf+h
  XP_019185417.1 195 LVHALMACAEAVHQENFKLADALVKHIGILAVSQAGAMRKVATYFAEALARRIYK--------IYPQDTLESSYTDVLQM--HFYETCPYLKFAH 279
                     689***************************************************9........44666655555555544..4************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+  ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g++La++Ae++gv+fef+ +va++l+dl+
  XP_019185417.1 280 FTANQAILEAFTDCSRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQEVGWKLAQLAETIGVEFEFRGFVANSLADLD 374
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282
                      + L+++p   Ea+aVn+v++lhrll + + +e+    vL+ +k+++Pk+v++veqea+hn++ Fl+rf eal+yys++fdsl +++l + ++++
  XP_019185417.1 375 ASILDIRPrhVEAVAVNSVFELHRLLGRGGGIEK----VLDSIKGMRPKIVTIVEQEANHNGGVFLDRFNEALHYYSTMFDSLeSSGLTQPNSQD 465
                     ********999***************99999999....*********************************************88889999**** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++++ +lgr+i+nvvaceg +r+erhetl++Wr r+++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+++SaW+
  XP_019185417.1 466 LVMSELYLGRQICNVVACEGPDRIERHETLSQWRTRMKSAGFEPVHLGSNAYKQASMLLALFAgGDGYRVEENDGCLMLGWHTRSLIATSAWQ 558
                     ********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    
MKRERDRPKA ASSSMGKGKI WEEHPPDAGM DELLAVLGYK VKTSDMADVA EKLEQLEMAM  60
EDGISHLSTS TVHYNPSDLT GWIQSMLSEL NASSSSPQSS CSAVLTGESS NIISFSGNKH  120
NGNGSRRISD DDLRAIPGGA IFSKGKESSS SESYKRQKSS AGSDFSGGEI GGGAAATETP  180
RSVMLVDSQE AGVRLVHALM ACAEAVHQEN FKLADALVKH IGILAVSQAG AMRKVATYFA  240
EALARRIYKI YPQDTLESSY TDVLQMHFYE TCPYLKFAHF TANQAILEAF TDCSRVHVID  300
FSLKQGMQWP ALMQALALRP GGPPAFRLTG IGPPQPDNSD ALQEVGWKLA QLAETIGVEF  360
EFRGFVANSL ADLDASILDI RPRHVEAVAV NSVFELHRLL GRGGGIEKVL DSIKGMRPKI  420
VTIVEQEANH NGGVFLDRFN EALHYYSTMF DSLESSGLTQ PNSQDLVMSE LYLGRQICNV  480
VACEGPDRIE RHETLSQWRT RMKSAGFEPV HLGSNAYKQA SMLLALFAGG DGYRVEENDG  540
CLMLGWHTRS LIATSAWQLN GGGGGDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein