PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019185404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 29613.7 Da PI: 9.7472 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 95 | 117 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H XP_019185404.1 95 SCSVCSRVYPTSRLLSIHISEaH 117 6******************9888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MAMELERAVR LEFPFWSPAR RRYGPDDPFF AAGNIERQLL AKQVALDLTE AEKQVVRNMD 60 YGESSDVFCP IIGCCAWLRS LDDFEDHYNA RHSASCSVCS RVYPTSRLLS IHISEAHDSF 120 FKAKVARGFA MYECLVEGCG AKLNSYKIRL QHLVDKHKFP ASYEFFRKAH PSKKRRQKNQ 180 LRQASFKTEQ DSNAMQVEDM DKLVSAVSKL STSDSPSTIS FGRNRNRGLA FMPRAVQCER 240 RPRPDSSQSS SVGGALNRRK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | KKRRQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-106 | C2H2 family protein |