PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185226.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 432aa MW: 47990.6 Da PI: 6.8429

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00077	147	167	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F + L H++ H XP_019185226.1 147 CKKCGKGFDSIRALYGHMKIH 167 *******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MGEVQEPKFF CKFCNKACFT GKSLGGHMRC HLDLIAAAKK QKLKPEGEED LGVSEEAMGA 60 KNQEKGKKMS FGESGDQASY GLREKPLKSW KVSDPKHCGL KKKKKDLCKE CGKRFPSVKA 120 LAGHLKCHSR KGSEVEEEEE EEEHHLCKKC GKGFDSIRAL YGHMKIHSKR SRPSSNGEES 180 AQSLSDLETM CPVRKKRSTI RYKLTSSNPP LSAVSEFEEV QDAAMCLMMI SRGVKTWNEF 240 VSANCESPPF FCKEEMPNSS NDYDDKDSIS WKNISEFCSE ICVNGCIRIE PFKKPEMDEP 300 SFDLHYLEMG ETSTSTNCWG ADSEITAKVS DTMEVETVIG GVMAIPESGT RSREHACPVC 360 FKVFQSGQAL GGHKRAHYSA TIETKVKKEN LSDIHEFLDL NLPVNAATGT AMDAAMEERL 420 WCIGSAGLLI SN

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MGEVQEPKFF CKFCNKACFT GKSLGGHMRC HLDLIAAAKK QKLKPEGEED LGVSEEAMGA  60
KNQEKGKKMS FGESGDQASY GLREKPLKSW KVSDPKHCGL KKKKKDLCKE CGKRFPSVKA  120
LAGHLKCHSR KGSEVEEEEE EEEHHLCKKC GKGFDSIRAL YGHMKIHSKR SRPSSNGEES  180
AQSLSDLETM CPVRKKRSTI RYKLTSSNPP LSAVSEFEEV QDAAMCLMMI SRGVKTWNEF  240
VSANCESPPF FCKEEMPNSS NDYDDKDSIS WKNISEFCSE ICVNGCIRIE PFKKPEMDEP  300
SFDLHYLEMG ETSTSTNCWG ADSEITAKVS DTMEVETVIG GVMAIPESGT RSREHACPVC  360
FKVFQSGQAL GGHKRAHYSA TIETKVKKEN LSDIHEFLDL NLPVNAATGT AMDAAMEERL  420
WCIGSAGLLI SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	2e-13	C2H2 family protein