PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G26590.1
Common NameT1K7.4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 361aa    MW: 40270.8 Da    PI: 8.9036
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G26590.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000261131323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C k+F++   L  Hir H
  AT1G26590.1 11 CKYCYKTFPSGKALGGHIRIH 31
                 *******************99 PP
2zf-C2H211.30.00116683320
                 ETTTTEEESSHHHHHHHH CS
      zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                 C  Cg++F +   L+ H+
  AT1G26590.1 66 CRECGRVFVSLKALRGHM 83
                 9****************9 PP
3zf-C2H211.60.00083315337123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F++   L  H r+H
  AT1G26590.1 315 HECPICFRMFKSGQALGGHKRSH 337
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.79E-7636No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4834IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-8927IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.801936IPR007087Zinc finger, C2H2
SMARTSM003550.31931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0966486IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5566491IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-66586No hitNo description
PfamPF139126.5E-86686IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-6310337No hitNo description
PfamPF139121.3E-9315338IPR007087Zinc finger, C2H2
SMARTSM003550.3315337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182315338IPR007087Zinc finger, C2H2
PROSITE patternPS000280317337IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEGKENSFL CKYCYKTFPS GKALGGHIRI HTNENSVGYN GNKKKRLVDQ RKMMAQKHKQ  60
QQQVGCRECG RVFVSLKALR GHMACHGEVK KMLMDDNSQS DTESETSSAP MRKRSKRVVM  120
KQSNSESLSN GSSSFGSEID QERRDGAYNL MMLSSDSSSF KKRRNMVMNS LGESSDNNSA  180
IVENKSSSGD EFKIMNVKNA VDDQWRSADD DGVSLCDSDG SDSDYFMNGP SKSESDISVD  240
RNTGFGSGFN NSLIRFRNSN EGGTKYELSK SKRALFSYET DSCADTNSKI HHRFKDSKSS  300
MVKKEGGEKV KSKGHECPIC FRMFKSGQAL GGHKRSHSIA NHAAEMRNQI DLYLPVSDTD  360
E
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183959660.0
Genevisible260998_at0.0
Expression AtlasAT1G26590-
AtGenExpressAT1G26590-
ATTED-IIAT1G26590-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G26590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G26590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319085.10.0C2H2-like zinc finger protein
RefseqNP_001323386.10.0C2H2-like zinc finger protein
RefseqNP_173981.10.0C2H2-like zinc finger protein
TrEMBLQ9FZE30.0Q9FZE3_ARATH; C2H2-like zinc finger protein
STRINGAT1G26590.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Representative plantOGRP5450716
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Lou Y,Gou JY,Xue HW
    PIP5K9, an Arabidopsis phosphatidylinositol monophosphate kinase, interacts with a cytosolic invertase to negatively regulate sugar-mediated root growth.
    Plant Cell, 2007. 19(1): p. 163-81
    [PMID:17220200]