PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019185050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22588.9 Da PI: 9.9413 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5.3e-22 | 20 | 69 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49 +rien+ +r+v+fskRr g++KKA+E+S+LC+++++v++f +++ k+y++ XP_019185050.1 20 ERIENDVQRNVSFSKRRFGLFKKASEISTLCGVKILVVVFPPNQeKVYTF 69 69**************************************9876379999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MSSNNSTRRL GRGRQRIPLE RIENDVQRNV SFSKRRFGLF KKASEISTLC GVKILVVVFP 60 PNQEKVYTFG SPSVPDVLNK YVAERENRTI ETNDTEEFLR SQEEANIRNV NHRINLLEEH 120 IQHEMNVSKA LTEAAKGMPS ISNLPLAELL PLKQKMETLL STVRQMLNQR TMPVQTPPMP 180 VMTTTQSDND VLPSGATPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-22 | M-type_MADS family protein |