PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184900.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 361aa    MW: 39880.7 Da    PI: 6.4473
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.3e-18255289135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_019184900.1 255 CLHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
METPEFFHGG YYEAEFSPDK RLLEKNGDNF IVEELLDLPN DDGLVAITDG GALDAATADS  60
STVTALENSC TSSAFSGEMT CHHLLDGQFS SDFAVPYDDL AELEWLSNIV EEPFSSEDME  120
KMQLISGIKA RNDEASEAQM VQPENTRANA VPMFRPDVSI PAKARSKRSR IAPGNWTSRI  180
LAVSAPATNT ITTTTITTTA TAIMPTPTIS SSSESDMVPN HARKRMKATM KKKESSASGG  240
AAVATLSNNS EGRRCLHCDT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPASSPT  300
FVLTKHSNSH RKVMEIRRQK ELHRAQHHQQ QFLHQNMMFD VSNASDYLIH QHVGPDYRQL  360
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228ARKRMKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-84GATA family protein