PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184621.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 412aa    MW: 46127.3 Da    PI: 5.0561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.33.9e-98294112374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL ecA a+s++d +++++lL+ l+elasp+gd  q+laa+f++AL  + +++++++yk+l + ++++++ +++ +    f+evsP+ +f+h+
  XP_019184621.1  29 ERLLRECAGAISEKDSAKIHQLLWMLNELASPYGDCDQKLAAHFLQALFCKATETGPKCYKTLLSVSEKSHSFDSARKLILKFQEVSPWTTFGHV 123
                     57999**********************************************************7777764444444444444************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledle 190
                     + N aIlea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ ++++ k  ++e+++r++kfA+ +gvpfefnv+   ++l +++
  XP_019184621.1 124 ASNGAILEALDGETKLHIIDISNTFCTQWPTLLEALATRNDETPHLKLTVVVTAATVVKSFMKEIAQRMEKFARLMGVPFEFNVVsGLTHLGEIT 218
                     *****************************************************9999***************************8445599**** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseeri 283
                      + L+v+ +E++a+n++ +l r+      +e+ r e+L++++sl+Pkvv+vve++ad   n+ +F++ f e+l++y+  +++l++++p++s+er 
  XP_019184621.1 219 KDVLNVRDDESVAINCIGALRRVA-----VEE-RGEILRTFRSLRPKVVTVVEEDADFthNRDDFVKCFEECLRFYTLYLEMLAESFPATSNERL 307
                     ***********************8.....444.89*******************9764449********************************** PP

            GRAS 284 kvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee............sgslvlgWk 363
                     ++Ere  +r+i  v+ c ++      e++e+  +W+e+l++aGF+p +l+++a++++k+ll+++k  g+ ++++               ++l+Wk
  XP_019184621.1 308 MLERE-CSRSILRVLGCDEQIsdgDSENRERGIQWSEKLRDAGFSPFTLNDDAVDDVKALLKRYK-GGWALQQQaagednttssssTSGIYLTWK 400
                     *****.89*********9876223567888889********************************.6788885555666777777566677**** PP

            GRAS 364 drpLvsvSaWr 374
                     d+p+v++SaW+
  XP_019184621.1 401 DEPVVWASAWK 411
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MQSNVSRSPP LDPTAAEGSA DRDGGKWAER LLRECAGAIS EKDSAKIHQL LWMLNELASP  60
YGDCDQKLAA HFLQALFCKA TETGPKCYKT LLSVSEKSHS FDSARKLILK FQEVSPWTTF  120
GHVASNGAIL EALDGETKLH IIDISNTFCT QWPTLLEALA TRNDETPHLK LTVVVTAATV  180
VKSFMKEIAQ RMEKFARLMG VPFEFNVVSG LTHLGEITKD VLNVRDDESV AINCIGALRR  240
VAVEERGEIL RTFRSLRPKV VTVVEEDADF THNRDDFVKC FEECLRFYTL YLEMLAESFP  300
ATSNERLMLE RECSRSILRV LGCDEQISDG DSENRERGIQ WSEKLRDAGF SPFTLNDDAV  360
DDVKALLKRY KGGWALQQQA AGEDNTTSSS STSGIYLTWK DEPVVWASAW KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-142GRAS family protein