PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184475.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 271aa    MW: 29637.4 Da    PI: 8.9418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_019184475.1 14 KGAWTKEEDQRLINYIRSHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding59.48e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd+l+++++ +lG++ W++Ia++++ gRt++++k++w+++
   XP_019184475.1  67 RGNFTEEEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR SHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG  120
LDPQTHRPIN SAAAACSGGG GGSTAKDICL DFRNAAAPAK SSNEKATLSL SQEDTKCNSG  180
TTTEESEQQQ QKDDQTALNL GLNLSIGLST TAARPRAETP SSSNSAESVA APPHAAAAAV  240
MNQSVCLCWQ LGWSPSGKLC TKCHNSYKWF P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-89MYB family protein