PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184175.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 238aa    MW: 27609.4 Da    PI: 8.7012
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.5e-1625110291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY +YAk++GF v++++s++  ++g+ ++ tf C k  ++e+++k+     +++ +t+t  +ak++ k+ +d+ +++t++el H H+l+p
  XP_019184175.1  25 FYTNYAKKMGFGVVTKSSTRG-DDGNLKHFTFACAKAHRKESTSKN---LLSSKLSTQTRSQAKIRFKRCEDESFKITTVELSHDHDLSP 110
                     9**************999997.8999**********9999998888...8889999*******************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDDEEKLNEP KVEMVFQSME EVFTFYTNYA KKMGFGVVTK SSTRGDDGNL KHFTFACAKA  60
HRKESTSKNL LSSKLSTQTR SQAKIRFKRC EDESFKITTV ELSHDHDLSP GKARHLRCHR  120
KLNEQVKRRL DINDQSGIAP NKNFRSLIVD AGGRHLKAII TDQCKAMQNA IAIVFPNTKH  180
MWCLWHIMKK LPEKLRGYSK YEEIKETLQS VVYDSLNENE FENGWSLLID IYDLNEND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.14e-16FAR1 family protein