PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183968.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 736aa    MW: 80668 Da    PI: 5.429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.42.1e-1333707351374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilk 92 
                     l +lLl cAeavs+++  la+++L +l+  ++p gd+mqR+a++fteAL+arla +  + +++ + ++ ++     s e l++++++++++P++k
  XP_019183968.1 370 LLHLLLVCAEAVSKENYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLASASAKSNNRPFNPPYppnSLEILKIYQILYQACPYVK 464
                     579****************************************************777777666666655443555******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++l+
  XP_019183968.1 465 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEELQ 554
                     *********************************************************....9**************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl++++++ + gEalaVn v +lhr++  + ++     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r
  XP_019183968.1 555 DLKPHMFNRRVGEALAVNAVNRLHRVP--PNCVG----NLLGMIRDQAPNIVTIVEQEANHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQR 643
                     **************************9..55555....5******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +kvE+ ++++ei n+vacegaer+ rhe+le+Wr+ +e  GFk vpls +a++q + ll  ++ dgyr+ e++g+l+lgW+drp++++SaWr
  XP_019183968.1 644 AKVEQYIFAQEIWNIVACEGAERVYRHERLERWRRVMEGKGFKGVPLSANAVTQSNILLGLYSCDGYRLTEDKGCLLLGWQDRPILAASAWR 735
                     *******************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    
MLNTLCGSMG SLSSEVGNLK IEEPSSSVKR ENSSLLSSCS TLLHQSDKVP VPLPAAASDY  60
EDHSSVVNGV CSFPAVKFEV SAGGDDISPD DQSYWESFFA DQLEGDFMIS SPVRSNMGAS  120
PQVSSFMNDV QMMITSPVRN CGYHHQNNGI IMSSPPRMMM AMSPLGPGPG PAQNNKGKGL  180
SPLHRVFNSP NAQHLMQMQT HDFSHLPALD NLLADFDGDQ DDNDFSSSYY SSTTLKHLPA  240
AASCSSVLSE SLLDCGGGGL QLPSRPLHSS ASVSSLQAPA LQGSCSQEDD DIIYQTTTTA  300
ATGGCGSLHI APLSHQLREE RNQEQQQQHN IIRRNLQSII AAPPAPLVLP LSAPPAEEEE  360
EEEQDSGLQL LHLLLVCAEA VSKENYMLAR RYLHHLNRVV TPLGDSMQRV ASCFTEALSA  420
RLAATLASAS AKSNNRPFNP PYPPNSLEIL KIYQILYQAC PYVKFAHFTA NQAIFEAFEA  480
EERVHVIDLD ILQGYQWPAF MQALAARPGG APFLRITGVG PSPEAVRETG RCLTELAHSL  540
HVPFEFHPVG EELQDLKPHM FNRRVGEALA VNAVNRLHRV PPNCVGNLLG MIRDQAPNIV  600
TIVEQEANHN GPYFLGRFLE ALHYYSAIFD SLDATFPADS SQRAKVEQYI FAQEIWNIVA  660
CEGAERVYRH ERLERWRRVM EGKGFKGVPL SANAVTQSNI LLGLYSCDGY RLTEDKGCLL  720
LGWQDRPILA ASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-93GRAS family protein