PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019183833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21126.3 Da PI: 10.6172 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.8 | 7.9e-20 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien+ r+v fs+Rr g++KKA+E+S+ C++e +++++s++gk y++s+ XP_019183833.1 20 SRIENDAHRSVIFSQRRRGLIKKANEISTWCGVEMLLVLISPSGKAYTFSK 70 59***********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence |
MSSNNSTKRA GRGRQRIPLS RIENDAHRSV IFSQRRRGLI KKANEISTWC GVEMLLVLIS 60 PSGKAYTFSK PNMDTILKNY FGDNPLAQTN FAEQHLRAQQ EVNMQIQYSR ITDLEMQIQD 120 QMKLNHALRD AKKARPPISD LPLSELQAMK HRIEMLRSYV LQAKMKVHAQ AIISHDDVGP 180 SGTSAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-26 | M-type_MADS family protein |