PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183831.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19993 Da    PI: 9.536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.6e-231161151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rien+ +r+ tfskRr g++KKA+E+S+LC++e +++ fs++gk y++s+
  XP_019183831.1 11 SRIENDAQRSGTFSKRRDGLIKKANEISTLCGVEMLLVFFSPSGKAYTFSN 61
                    59***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGRGRQRIPL SRIENDAQRS GTFSKRRDGL IKKANEISTL CGVEMLLVFF SPSGKAYTFS  60
NPNMDTILKK YFGDNPMAQT NFTEQHLPAQ QEVNMQIQYS RITDLEMQIQ DQMKLNQALR  120
DAEKARPPIS DLPLSELQAM KHRMEMLRCD VLQAKMKVHA QAKIAHDDVG PSGGSAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-28M-type_MADS family protein