PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183206.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 471aa MW: 52982.4 Da PI: 6.7953

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	67	87	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H XP_019183206.1 67 CHVCNKGFSSGKALGGHMRIH 87 *******************99 PP
2	zf-C2H2	15	7.4e-05	154	175	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk F + +L H+r+H XP_019183206.1 154 VCLICGKDFQSMKSLYGHMRSH 175 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MVEELENQLS QETIIKKGQL RFDGGDGRRL SIKLKNVPKE EDQEEEEEEG YEVFDGESEK 60 KIITRICHVC NKGFSSGKAL GGHMRIHGQQ YKKRKEDAAF QVKEDEEEED EYEYCYDDNE 120 EDERVVIRRG GIVERMKKKR RKRFMKKMKM VVPVCLICGK DFQSMKSLYG HMRSHPRNWK 180 GIHPPAETAE NPVVSGGAAT VVDLNKALKC WSVTAKRGRK VMSGGDQTSS LSEDTEEEQL 240 RDAAHELMML AHGASHHDQE LDSKSLSYKV MTKNNVRGKA KAMPENQEAA AFGGFTENSS 300 LGGEESKKKS IIISGHRETT YNNIANENTR KKRKKLIKLK DLGSVHHNAA AAVDHDNRTL 360 AAEKYKCSEC DKWFRSHQAL GGHKSSHNKL CKMVIQNSID DDDQVPLMPS IQVTNSPGEL 420 SHTTAGGGGG SSQHRHHQIL DFDLNEVPQT TEEENEAAAA DQIMGMLQFL D

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MVEELENQLS QETIIKKGQL RFDGGDGRRL SIKLKNVPKE EDQEEEEEEG YEVFDGESEK  60
KIITRICHVC NKGFSSGKAL GGHMRIHGQQ YKKRKEDAAF QVKEDEEEED EYEYCYDDNE  120
EDERVVIRRG GIVERMKKKR RKRFMKKMKM VVPVCLICGK DFQSMKSLYG HMRSHPRNWK  180
GIHPPAETAE NPVVSGGAAT VVDLNKALKC WSVTAKRGRK VMSGGDQTSS LSEDTEEEQL  240
RDAAHELMML AHGASHHDQE LDSKSLSYKV MTKNNVRGKA KAMPENQEAA AFGGFTENSS  300
LGGEESKKKS IIISGHRETT YNNIANENTR KKRKKLIKLK DLGSVHHNAA AAVDHDNRTL  360
AAEKYKCSEC DKWFRSHQAL GGHKSSHNKL CKMVIQNSID DDDQVPLMPS IQVTNSPGEL  420
SHTTAGGGGG SSQHRHHQIL DFDLNEVPQT TEEENEAAAA DQIMGMLQFL D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	143	MKKKRRKR
2	137	141	KKKRR
3	137	142	KKKRRK
4	137	143	KKKRRKR
5	138	142	KKRRK
6	331	335	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	5e-10	C2H2 family protein