PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183205.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 498aa MW: 56070.8 Da PI: 6.8238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	46	66	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H XP_019183205.1 46 CHVCNKGFSSGKALGGHMRIH 66 *******************99 PP
2	zf-C2H2	14.9	7.9e-05	133	154	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk F + +L H+r+H XP_019183205.1 133 VCLICGKDFQSMKSLYGHMRSH 154 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MVEELENQLS IKLKNVPKEE DQEEEEEEGY EVFDGESEKK IITRICHVCN KGFSSGKALG 60 GHMRIHGQQY KKRKEDAAFQ VKEDEEEEDE YEYCYDDNEE DERVVIRRGG IVERMKKKRR 120 KRFMKKMKMV VPVCLICGKD FQSMKSLYGH MRSHPRNWKG IHPPAETAEN PVVSGGAATV 180 VDLNKALKCW SVTAKRGRKV MSGGDQTSSL SEDTEEEQLR DAAHELMMLA HGASHHDQEL 240 DSKSLSYKVV DDEHGDRNNW VNLDFTVRKP APFSVGKQQL RIDGGNTKNL RPNTSRVMTK 300 NNVRGKAKAM PENQEAAAFG GFTENSSLGG EESKKKSIII SGHRETTYNN IANENTRKKR 360 KKLIKLKDLG SVHHNAAAAV DHDNRTLAAE KYKCSECDKW FRSHQALGGH KSSHNKLCKM 420 VIQNSIDDDD QVPLMPSIQV TNSPGELSHT TAGGGGGSSQ HRHHQILDFD LNEVPQTTEE 480 ENEAAAADQI MGMLQFLD

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MVEELENQLS IKLKNVPKEE DQEEEEEEGY EVFDGESEKK IITRICHVCN KGFSSGKALG  60
GHMRIHGQQY KKRKEDAAFQ VKEDEEEEDE YEYCYDDNEE DERVVIRRGG IVERMKKKRR  120
KRFMKKMKMV VPVCLICGKD FQSMKSLYGH MRSHPRNWKG IHPPAETAEN PVVSGGAATV  180
VDLNKALKCW SVTAKRGRKV MSGGDQTSSL SEDTEEEQLR DAAHELMMLA HGASHHDQEL  240
DSKSLSYKVV DDEHGDRNNW VNLDFTVRKP APFSVGKQQL RIDGGNTKNL RPNTSRVMTK  300
NNVRGKAKAM PENQEAAAFG GFTENSSLGG EESKKKSIII SGHRETTYNN IANENTRKKR  360
KKLIKLKDLG SVHHNAAAAV DHDNRTLAAE KYKCSECDKW FRSHQALGGH KSSHNKLCKM  420
VIQNSIDDDD QVPLMPSIQV TNSPGELSHT TAGGGGGSSQ HRHHQILDFD LNEVPQTTEE  480
ENEAAAADQI MGMLQFLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	122	MKKKRRKR
2	116	120	KKKRR
3	116	121	KKKRRK
4	116	122	KKKRRKR
5	117	121	KKRRK
6	358	362	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	6e-10	C2H2 family protein