PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183203.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 502aa MW: 56801.8 Da PI: 7.3613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	67	87	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H XP_019183203.1 67 CHVCNKGFSSGKALGGHMRIH 87 *******************99 PP
2	zf-C2H2	14.9	8e-05	154	175	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk F + +L H+r+H XP_019183203.1 154 VCLICGKDFQSMKSLYGHMRSH 175 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MVEELENQLS QETIIKKGQL RFDGGDGRRL SIKLKNVPKE EDQEEEEEEG YEVFDGESEK 60 KIITRICHVC NKGFSSGKAL GGHMRIHGQQ YKKRKEDAAF QVKEDEEEED EYEYCYDDNE 120 EDERVVIRRG GIVERMKKKR RKRFMKKMKM VVPVCLICGK DFQSMKSLYG HMRSHPRNWK 180 GIHPPAETAE NPVVSGGAAT VVDLNKALKC WSVTAKRGRK VMSGGDQTSS LSEDTEEEQL 240 RDAAHELMML AHGASHHDQE LDSKSLSYKV VDDEHGDRNN WVNLDFTVRK PAPFSVGKQQ 300 LRIDGGNTKN LRPNTSRVMT KNNVRGKAKA MPENQESKKK SIIISGHRET TYNNIANENT 360 RKKRKKLIKL KDLGSVHHNA AAAVDHDNRT LAAEKYKCSE CDKWFRSHQA LGGHKSSHNK 420 LCKMVIQNSI DDDDQVPLMP SIQVTNSPGE LSHTTAGGGG GSSQHRHHQI LDFDLNEVPQ 480 TTEEENEAAA ADQIMGMLQF LD

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MVEELENQLS QETIIKKGQL RFDGGDGRRL SIKLKNVPKE EDQEEEEEEG YEVFDGESEK  60
KIITRICHVC NKGFSSGKAL GGHMRIHGQQ YKKRKEDAAF QVKEDEEEED EYEYCYDDNE  120
EDERVVIRRG GIVERMKKKR RKRFMKKMKM VVPVCLICGK DFQSMKSLYG HMRSHPRNWK  180
GIHPPAETAE NPVVSGGAAT VVDLNKALKC WSVTAKRGRK VMSGGDQTSS LSEDTEEEQL  240
RDAAHELMML AHGASHHDQE LDSKSLSYKV VDDEHGDRNN WVNLDFTVRK PAPFSVGKQQ  300
LRIDGGNTKN LRPNTSRVMT KNNVRGKAKA MPENQESKKK SIIISGHRET TYNNIANENT  360
RKKRKKLIKL KDLGSVHHNA AAAVDHDNRT LAAEKYKCSE CDKWFRSHQA LGGHKSSHNK  420
LCKMVIQNSI DDDDQVPLMP SIQVTNSPGE LSHTTAGGGG GSSQHRHHQI LDFDLNEVPQ  480
TTEEENEAAA ADQIMGMLQF LD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	143	MKKKRRKR
2	137	141	KKKRR
3	137	142	KKKRRK
4	137	143	KKKRRKR
5	138	142	KKRRK
6	362	366	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	6e-10	C2H2 family protein