PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182848.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 602aa    MW: 66080.1 Da    PI: 4.8783
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.52.9e-1042296012373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L++cA+  + ++ e+a + L r+++ +s+ gdp++R+a yf eAL +rl++     +   +p +  + +s+e + ++k++++++P+ kf+hl
  XP_019182848.1 229 LKALVDCARL-AVSQPENAVKSLIRIRDSVSQLGDPTERVAYYFSEALYNRLSN-----SPEKRPANF-DASSEELTLSYKALNDACPYSKFAHL 316
                     689*****95.55688999999*******************************9.....211222222.2337888999**************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e+++++HiiDf+i qG+QW+aLlqaLa+R++g+p s+Ri g+ sp  g   + +l +tg+rL++fA+ l+++fef++ v   +++
  XP_019182848.1 317 TANQAILEATEKASKIHIIDFGIVQGIQWAALLQALATRSGGKPdSIRISGIPSPVLGnsPAASLLATGNRLRDFAKVLDLNFEFEP-VLGPIHS 410
                     ****************************************88777*********9988889999***********************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+E laVn++lql++llde++++     + Lkl +sl+P +v++ e e++ n+  Fl+rf +al+yysa+f+sl+ ++ r+s er+
  XP_019182848.1 411 LNGSSFRVDPDEILAVNFMLQLYNLLDETTATVG---TALKLANSLNPSIVTLGEYEMSPNRVGFLKRFKNALKYYSAIFESLDPNMTRDSPERV 502
                     ***************************9999999...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rre......rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvs 369
                     kvE  llgr+i ++   e+++ ++e      + e + +Wr  +e+aGFk+v++s++a +qak ll +++ s  y++ ++   ++ l W+d+pL++
  XP_019182848.1 503 KVESLLLGRRIAELMRPEEQRaKTEcvevevEVEDKDHWRILMESAGFKAVAISHYAHSQAKILLWNYNySSSYSLIDSPPGFLsLAWNDEPLLT 597
                     ***************9988773443332333567899********************************9999999877666655********** PP

            GRAS 370 vSaW 373
                     vS+W
  XP_019182848.1 598 VSSW 601
                     **** PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIQ QKQQKQQEQE QQQQQEQQQQ KEHFLGLNSF CLNPWSAGLN  60
GGSGLGYGLV GGHAFADSFQ VPAVEPGFQF PSLDNQLGAF RFPDFGGGGE FDSDEWMEGL  120
MDGGDSTGSS NLHSAWQNNS DFTALYAADP FSASPTRLRI ASSSPTHLNS VIFADNQKNH  180
APPPPQTLPW FPTASAQPPP PSAKDTTPQR NDVVAEGSSP ESLSSKPLLK ALVDCARLAV  240
SQPENAVKSL IRIRDSVSQL GDPTERVAYY FSEALYNRLS NSPEKRPANF DASSEELTLS  300
YKALNDACPY SKFAHLTANQ AILEATEKAS KIHIIDFGIV QGIQWAALLQ ALATRSGGKP  360
DSIRISGIPS PVLGNSPAAS LLATGNRLRD FAKVLDLNFE FEPVLGPIHS LNGSSFRVDP  420
DEILAVNFML QLYNLLDETT ATVGTALKLA NSLNPSIVTL GEYEMSPNRV GFLKRFKNAL  480
KYYSAIFESL DPNMTRDSPE RVKVESLLLG RRIAELMRPE EQRAKTECVE VEVEVEDKDH  540
WRILMESAGF KAVAISHYAH SQAKILLWNY NYSSSYSLID SPPGFLSLAW NDEPLLTVSS  600
WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein