PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182814.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 493aa MW: 55205.6 Da PI: 6.7403

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.3	3.9e-20	144	234	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++s+v++ ++ +p +f+++h + +++tl+le+esg++++vk+ ++ + l++GW++Fv a+ L egD+++F+l+++ ++l+v XP_019182814.1 144 FLKLLVRSHVGSCFWMGFPVPFCKKHLSR--TDTTLVLENESGEEFSVKY--LAGKTG--LSAGWRKFVAAHTLLEGDVLIFQLVST--ERLKVY 230 89**********************655..6779***********..555544..9********************9874..455998 PP EE-S CS B3 96 vfrk 99 v+r+ XP_019182814.1 231 VIRA 234 8886 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MKLKVVLNQE NLGDLDVPKE EIMEEEEEEE EEEEEAGRPG NEGNLSLVSL PISDHAPAPS 60 PGKRKRKAKG VMDEFSPLLF IRKRKKRPRP PGSQFNHEVD DYKGKSPGTA NSSFRSSNHL 120 QVKSPTLICA EEVQSSLGEE YPTFLKLLVR SHVGSCFWMG FPVPFCKKHL SRTDTTLVLE 180 NESGEEFSVK YLAGKTGLSA GWRKFVAAHT LLEGDVLIFQ LVSTERLKVY VIRANDLTEV 240 DGALSLLNLE VFTKQSNAVE GATCNNKRRK HQKSLPLIAV EKGSTKQLSG NDSDGVASEV 300 LEDSKSSRLA VSFGDIKTFE DFTIVVNNRC VDSGISEHVR RRYYELCSSK NAFLHEWLLP 360 GLSCELVVGV IFELVSIADA IRACKLTTTV KEFEKWDKSL RSFELLGMKT GFLRTHVQRL 420 QSLAFGSEGA SDAKRYREAK AGQSRTEDEI RRLELKLAAV KETCEKYGAD AEALKSKAES 480 HEEKFRERVE APW

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MKLKVVLNQE NLGDLDVPKE EIMEEEEEEE EEEEEAGRPG NEGNLSLVSL PISDHAPAPS  60
PGKRKRKAKG VMDEFSPLLF IRKRKKRPRP PGSQFNHEVD DYKGKSPGTA NSSFRSSNHL  120
QVKSPTLICA EEVQSSLGEE YPTFLKLLVR SHVGSCFWMG FPVPFCKKHL SRTDTTLVLE  180
NESGEEFSVK YLAGKTGLSA GWRKFVAAHT LLEGDVLIFQ LVSTERLKVY VIRANDLTEV  240
DGALSLLNLE VFTKQSNAVE GATCNNKRRK HQKSLPLIAV EKGSTKQLSG NDSDGVASEV  300
LEDSKSSRLA VSFGDIKTFE DFTIVVNNRC VDSGISEHVR RRYYELCSSK NAFLHEWLLP  360
GLSCELVVGV IFELVSIADA IRACKLTTTV KEFEKWDKSL RSFELLGMKT GFLRTHVQRL  420
QSLAFGSEGA SDAKRYREAK AGQSRTEDEI RRLELKLAAV KETCEKYGAD AEALKSKAES  480
HEEKFRERVE APW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	85	KRKRKAKGVMDEFSPLLFIRKRK
2	63	86	KRKRKAKGVMDEFSPLLFIRKRKK
3	64	86	KRKRKAKGVMDEFSPLLFIRKRK
4	65	87	KRKRKAKGVMDEFSPLLFIRKRK
5	82	86	RKRKK
6	86	90	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-33	B3 family protein