PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182594.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 265aa    MW: 28868.7 Da    PI: 8.3678
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-20140174135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  XP_019182594.1 140 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 174
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MMRRCSSGCH GNMVGTCSCG LFHHHHHSQS GNGSSSSAFS MFFSSAAPSN HRPAVNAYGD  60
YEDAQNMYSF ASSSSSVDCT LSLGTPSTRL TTENEKKADH HRSKSSFCWD IFQSNKQPPS  120
SAANHKSGRP AAAPDVARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRYK KEERRASAAA  180
ATANGGAPGM DSQQMMINNP WVHHHQYSQA PQKVSCYPSV AYGNEFRFIE EDDHRDSDAG  240
AGGISFLSWR LNVADRPSLV HDFTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-50GATA family protein