PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182444.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25844.4 Da    PI: 5.8435
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr+g++KKAeELSvLCda+va+iifsstgkl++y+s
  XP_019182444.1  9 KKIDNATARQVTFSKRRKGLFKKAEELSVLCDADVALIIFSSTGKLFDYAS 59
                    68***********************************************86 PP
2K-box62.61.5e-21921721999
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++++L kei  + + +R++ GedL+ +s++eLqqLe+ Le++l+++ +kK e ++++i+elq+k  +l een++L+++++
  XP_019182444.1  92 ANHSRLSKEIADMTHRLRQMRGEDLQGMSIEELQQLEKSLETGLTRVIEKKGEKIMKEINELQQKGMNLMEENERLTQQVM 172
                     6789**************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVREKIQIKK IDNATARQVT FSKRRKGLFK KAEELSVLCD ADVALIIFSS TGKLFDYASS  60
SMKGILERRN LHSRNLEKMD QPSLELQLVE NANHSRLSKE IADMTHRLRQ MRGEDLQGMS  120
IEELQQLEKS LETGLTRVIE KKGEKIMKEI NELQQKGMNL MEENERLTQQ VMAISNGQRV  180
ITAVANSDNL LNEEGLSSES ITNVCNSTSP PQDYDDSSDT SLKLGLVLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-103MIKC_MADS family protein