PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180456.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 236aa    MW: 26621.4 Da    PI: 8.743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-0787132555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er RR+r ++++  L +llP       +K +K +i ++A   I++L+
  XP_019180456.1  87 HMINERMRRERQKQSYLALHRLLPLG-----TKGDKNTIIQMAAARIQELE 132
                     889*********************97.....79**************9995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDEFFQNGCS QETATPLQWF DDFLPLVNPS AFVKYVDQRV GGVGSKGDGS GSSRDGNANK  60
RMVEFLGKMW KPALQTMQTA QERVHRHMIN ERMRRERQKQ SYLALHRLLP LGTKGDKNTI  120
IQMAAARIQE LELCKEELMR RNSEIEMTLA ASNNENNEGV SNKGKIISVK VAYPSSGIDS  180
MLQVLECLKN SGTKLRSMHS NFSPQEFSAL LEIEAKVCMG EGRLPCDFSQ QRTTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297RMRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-43bHLH family protein