PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180152.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 489aa    MW: 54319.1 Da    PI: 4.8703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.9e-1031064831374
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea++   ++ ela+ +L rl+elasp++ ++m+Rlaayft AL+a l + +s  +k++p+s+++ + + ++laa++l++++sP++k
  XP_019180152.1 106 LVHLLMAAAEALTGlnKSRELARVILVRLKELASPRDgTNMERLAAYFTDALQALLDGAGSLHAKSFPASKDD-HPHGDALAAFQLLQDMSPYVK 199
                     68***********84355569***********9998769*******************999999999888886.5689999************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlv 182
                     f+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR+   ++p+lRiT++++   +   s  +++etg+rL+ fA+++g pf+f+   
  XP_019180152.1 200 FGHFTANQAILEAVTHDRRVHIVDYDIMEGIQWASLMQALISRQdgLPAPHLRITALSRGGGSgrrSFCSVQETGRRLTAFAASIGQPFSFHQCR 294
                     ********************************************544588*********55448888899***********************99 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276
                      ++ e++++++L++ +gEa++Vn++l+l ++  +s ++     ++L+   +l+P++v++ve+ea    ++ F++rf+++l++ysal+dslea++p
  XP_019180152.1 295 LDSDETFKPSALKLVRGEAIIVNCMLHLPHFSYRSPDSIA---SFLSGSATLNPRLVTLVEEEAAPpRDGGFVDRFMDTLHHYSALYDSLEAGFP 386
                     99*****************************866665555...9*******************9999**************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvs 369
                      ++++r+ vEr++lg++i+ +++ + + r e+     +W e++ e+aGF+p ++s  + +qaklll  ++ dgyr+ee  ++ l+lgWk+r+L+s
  XP_019180152.1 387 MQDQARTLVERVFLGPKISVAITRSYRCRGEEYG--WSWGEWVpENAGFRPKTISFANRCQAKLLLGLFN-DGYRIEEIgNHKLILGWKSRRLLS 478
                     **********************999999766555..8999998456************************.******97588899********** PP

            GRAS 370 vSaWr 374
                     +S W+
  XP_019180152.1 479 ASIWT 483
                     ****6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MMMDDEILPD FDFGRYSGYS TTTTTTTPSS DDDHAATWNG SSPLVDWEFF SGDDEFGDLI  60
DSMMDGQAAN AVGLTFPAIP TVVEVEEEEE EEEEYNIVED TKGLRLVHLL MAAAEALTGL  120
NKSRELARVI LVRLKELASP RDGTNMERLA AYFTDALQAL LDGAGSLHAK SFPASKDDHP  180
HGDALAAFQL LQDMSPYVKF GHFTANQAIL EAVTHDRRVH IVDYDIMEGI QWASLMQALI  240
SRQDGLPAPH LRITALSRGG GSGRRSFCSV QETGRRLTAF AASIGQPFSF HQCRLDSDET  300
FKPSALKLVR GEAIIVNCML HLPHFSYRSP DSIASFLSGS ATLNPRLVTL VEEEAAPPRD  360
GGFVDRFMDT LHHYSALYDS LEAGFPMQDQ ARTLVERVFL GPKISVAITR SYRCRGEEYG  420
WSWGEWVPEN AGFRPKTISF ANRCQAKLLL GLFNDGYRIE EIGNHKLILG WKSRRLLSAS  480
IWTSVHSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-156GRAS family protein