PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179463.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 700aa MW: 80222.5 Da PI: 7.8557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	83	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + gk+ + +++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel XP_019179463.1 83 EFYSEFAKRCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGKTPVKPANENKPQRNRKSSRCGCQAYMRISKNSdlgLPEWRVTGFVNHHNHELL 176 6************9998876356667999*************99******************9765579***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MRALVPLCDS VSIQQGVERD TMSGEAGNMM LVYGDPSDQR SFSLDDTSST EESPEQTRLS 60 LETTNESIPY MGQRFPTHDA AYEFYSEFAK RCGFSIRRHR TEGKEGVGKG LTRRYFVCHR 120 AGKTPVKPAN ENKPQRNRKS SRCGCQAYMR ISKNSDLGLP EWRVTGFVNH HNHELLEPNQ 180 VRFLPAYRTI CDADKSRILM FAKTGISVQQ MMRLLELEKC VEPGYLPFTE KDVRNLLQSF 240 RKVDPEDESI DLLRMCRNIK ERDPNFKYDF TLDCNNRLEN IAWSYASSIQ SYEIFGDAVV 300 FDTTHCLTAF DMPMGIWVGV NNYGMPCFFG CVLLREENVR SFSWALKAFL GFMNGKAPQT 360 VLTDQNMCLK EAIAVEMPTT KHALCIWLIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES 420 IDDFELGWRD MVNLFGLHNN RHIASLLSLR SLWALPYLRS HFFAGMVTAG HSKSINAFIQ 480 RFLSAQTRLA HFVEQVAVAV DFKDQTGEQQ TMQQNLQNIC LKTGAPMESH AATVLTPFAF 540 SKLQEQLVLA AHYASFQLED GFLVRHHTKA EGGRKVYWVP REGIIGCSCQ LFEFSGILCR 600 HALRVLSTGN CFQIPERYLP LRWRRISLPS SKAPQTNQND HTERVQSLQS LVSNLVTESA 660 KSKERLDFAS EQISILLTQI REQPVYSQEV RELSSIQRNL

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MRALVPLCDS VSIQQGVERD TMSGEAGNMM LVYGDPSDQR SFSLDDTSST EESPEQTRLS  60
LETTNESIPY MGQRFPTHDA AYEFYSEFAK RCGFSIRRHR TEGKEGVGKG LTRRYFVCHR  120
AGKTPVKPAN ENKPQRNRKS SRCGCQAYMR ISKNSDLGLP EWRVTGFVNH HNHELLEPNQ  180
VRFLPAYRTI CDADKSRILM FAKTGISVQQ MMRLLELEKC VEPGYLPFTE KDVRNLLQSF  240
RKVDPEDESI DLLRMCRNIK ERDPNFKYDF TLDCNNRLEN IAWSYASSIQ SYEIFGDAVV  300
FDTTHCLTAF DMPMGIWVGV NNYGMPCFFG CVLLREENVR SFSWALKAFL GFMNGKAPQT  360
VLTDQNMCLK EAIAVEMPTT KHALCIWLIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES  420
IDDFELGWRD MVNLFGLHNN RHIASLLSLR SLWALPYLRS HFFAGMVTAG HSKSINAFIQ  480
RFLSAQTRLA HFVEQVAVAV DFKDQTGEQQ TMQQNLQNIC LKTGAPMESH AATVLTPFAF  540
SKLQEQLVLA AHYASFQLED GFLVRHHTKA EGGRKVYWVP REGIIGCSCQ LFEFSGILCR  600
HALRVLSTGN CFQIPERYLP LRWRRISLPS SKAPQTNQND HTERVQSLQS LVSNLVTESA  660
KSKERLDFAS EQISILLTQI REQPVYSQEV RELSSIQRNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein