PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178749.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 349aa    MW: 39699.3 Da    PI: 9.3557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.2e-18142232199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    +++++++lede+g +++  +i ++++    l++GW+ F+ +++L++gD +vF l++ ++f  +v 
  XP_019178749.1 142 FVKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVDIVLEDEEGAEYDAVYISKRTG----LSGGWRAFALDHKLDDGDALVFDLVEPTKF--KVY 228
                     89************************53..3789****************544444....***********************9876666..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_019178749.1 229 IVRA 232
                     8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MANDNSANSY EEARKQRVLD NKKRFEDLGI LKISKSLSDL AKSEKKSPAK QLKVRHKPNE  60
AYMLEPRRSS RARNPAPSYR DDVKIDVELP SFRKRSKLGS SWASYLARPI EEVKTASYEE  120
RSKALKEAEK LQSNLQSENP SFVKSMVRSH VYSCFWLGLP TRFCEDHLPK STVDIVLEDE  180
EGAEYDAVYI SKRTGLSGGW RAFALDHKLD DGDALVFDLV EPTKFKVYIV RASHCSSQGD  240
ETDAREEESG GEETKNETAI RRKKRDAQSR DSTKSQEEVP SVVEETKNET TKPRKRRNTQ  300
SRDSIKPQKE IPTIAEETKE ATQSKDSTTL QKEASATRRS ARLLSCRSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-67B3 family protein