PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178621.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 561aa MW: 61014.7 Da PI: 5.9373

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.8	2.2e-33	222	279	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g Hnh+k XP_019178621.1 222 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKKVERAL-DGQITEIVYKGAHNHPK 279 8**************************************.*************85 PP
2	WRKY	105.1	3.8e-33	398	456	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+ XP_019178621.1 398 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCPVRKHVERASHDIRSVITTYEGKHNHD 456 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MAASSGTVDA STVSSSFSFS TAPSSFMSTS FTDLLASDDY PSTAAGASAS RGLADRIAER 60 TGSGVPKFKS LPPPSLPLSP PSVSPSSYFA FPPGLSPSEL LDSPVLLSSS NILPSPTTGT 120 FPALNFNWKN DSNTTQEDVK QEDKGYPDFS FQTNSVSMQT LNYEDSKRKD GLSSEKTVSE 180 FNSLQQSLPP VTTSTQMSSQ NYSEYNQCCP PSQTLREQRR SDDGYNWRKY GQKQVKGSEN 240 PRSYYKCTHP NCPTKKKVER ALDGQITEIV YKGAHNHPKP QSTRRSSSST ASSASTLAAQ 300 SYNAPASEVP DQSYWSNGNG QMDSVATPEN SSISIGDDEF EQSSQKRESG GGDEFDEDEP 360 DAKRWKVENE SEGVSAPGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS 420 YYKCTSQGCP VRKHVERASH DIRSVITTYE GKHNHDVPAA RGSGGHALNR GANPNNNAAM 480 AMAIRPSTMS LQSNYPIPIP STRPIPGEGQ APYEMLQGPG SFGYSGFGNP MNGYANQIQD 540 NAFSRAKEEP RDDLFLETLL A

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MAASSGTVDA STVSSSFSFS TAPSSFMSTS FTDLLASDDY PSTAAGASAS RGLADRIAER  60
TGSGVPKFKS LPPPSLPLSP PSVSPSSYFA FPPGLSPSEL LDSPVLLSSS NILPSPTTGT  120
FPALNFNWKN DSNTTQEDVK QEDKGYPDFS FQTNSVSMQT LNYEDSKRKD GLSSEKTVSE  180
FNSLQQSLPP VTTSTQMSSQ NYSEYNQCCP PSQTLREQRR SDDGYNWRKY GQKQVKGSEN  240
PRSYYKCTHP NCPTKKKVER ALDGQITEIV YKGAHNHPKP QSTRRSSSST ASSASTLAAQ  300
SYNAPASEVP DQSYWSNGNG QMDSVATPEN SSISIGDDEF EQSSQKRESG GGDEFDEDEP  360
DAKRWKVENE SEGVSAPGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS  420
YYKCTSQGCP VRKHVERASH DIRSVITTYE GKHNHDVPAA RGSGGHALNR GANPNNNAAM  480
AMAIRPSTMS LQSNYPIPIP STRPIPGEGQ APYEMLQGPG SFGYSGFGNP MNGYANQIQD  540
NAFSRAKEEP RDDLFLETLL A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-115	WRKY family protein