PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178226.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 387aa MW: 42382.5 Da PI: 8.2893

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	150	173	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ F +L++H+ H XP_019178226.1 150 YPCTLCGEIFLATNLLEQHQFIkH 173 99*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MAKPSCLRPL FSMFLSLLGL LLLHLGCFIF SSSSSSAVAD NDRPDQPPQN SGRNRKVSSS 60 SSSSRLKRST AGAVSASWSF VKRLFSCAAR PAAAATPPPP HPSIPSPCSS SRSLTKPIVI 120 PLASPDKLSP DPLSDICSDQ PNIPLRNNIY PCTLCGEIFL ATNLLEQHQF IKHAISELVD 180 GDSGNNIVQI IFKTGWPETA KNPVIRRILK IHNSPKILTR FEEYREHVKS KAARNIAGRR 240 RDERCIADGN ELLRFHCATF LCGLGENGAS GVCTNQYCSV CGIIKTGFSP KMDGISTQSS 300 GWRAHAAVPE EIEEEFKFMH VKRAMLVCRV IAGRVGSDPD VVDKDDPGFD SLVGRENGAH 360 PRLDEEEELW VFNPRAVLPC FVIVYNV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MAKPSCLRPL FSMFLSLLGL LLLHLGCFIF SSSSSSAVAD NDRPDQPPQN SGRNRKVSSS  60
SSSSRLKRST AGAVSASWSF VKRLFSCAAR PAAAATPPPP HPSIPSPCSS SRSLTKPIVI  120
PLASPDKLSP DPLSDICSDQ PNIPLRNNIY PCTLCGEIFL ATNLLEQHQF IKHAISELVD  180
GDSGNNIVQI IFKTGWPETA KNPVIRRILK IHNSPKILTR FEEYREHVKS KAARNIAGRR  240
RDERCIADGN ELLRFHCATF LCGLGENGAS GVCTNQYCSV CGIIKTGFSP KMDGISTQSS  300
GWRAHAAVPE EIEEEFKFMH VKRAMLVCRV IAGRVGSDPD VVDKDDPGFD SLVGRENGAH  360
PRLDEEEELW VFNPRAVLPC FVIVYNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-104	C2H2 family protein