PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178171.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 282aa    MW: 31400 Da    PI: 4.8862
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.6e-1897177286
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                      Yn+YA+++GFsvrk ++ ++  +++i +++f+Csk g++++   k      ++  trtgC+a ++    +dg w +tk e+ Hn
  XP_019178171.1  97 LYNNYAYRLGFSVRKGHQCYKGSTNTIQMKNFCCSKAGYKANCGVK----AYSKIDTRTGCEAFVQFDVGDDGLWTITKHEKVHN 177
                     7********************99999***************99877....8999******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEDGTEQTNS AVGAGHSIQG ALHFAIVFAF VPFAFLYDFV IHCDTIVFSS DVFSESIMDG  60
AVSSDQEDVD IDGSSSIPVD QDLVGLVVSN VDEAFDLYNN YAYRLGFSVR KGHQCYKGST  120
NTIQMKNFCC SKAGYKANCG VKAYSKIDTR TGCEAFVQFD VGDDGLWTIT KHEKVHNELY  180
VFNKSHLLRS HRSVRDNQLL YLQGLKDSGV ALADGIRFLK HQSGGSPLVG FTNRDAYNSM  240
PADTVKRLDG TDSNSLIEFF RRRQSTESDF FFDFELDLDA RL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-14FAR1 family protein