PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177804.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 567aa MW: 63346.8 Da PI: 6.2925

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++ F ++ n++rH+r+H XP_019177804.1 72 HKCEKCSREFFSSINYRRHLRLH 94 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MPTARLSTVG SSDAMESVEG NDTLYTLISQ ATGKDPIVSG DKPIQWIQLL HALEQPDLPY 60 WPIVTPVKVQ MHKCEKCSRE FFSSINYRRH LRLHRRALNF DKESRKYRDL LGAFWNKLSL 120 EEVKEVASLN DISLKDIPGT LLVKTLTESL QTSSAWMWSL PTVYMKAGTT LMDIIEAKPS 180 RLPISSLELF SVLDDASEGT FLCAGTADSM QKYLFDDEVT KVCLELRNLA ACICFAFEQK 240 LVKAWIADKE AEALRCQKLL VEEEEAAQRR QTELLEKKRQ KKLRQKELKA KDQMSEGKAS 300 LVGSADSSEN PLVAEISSPP TLFDSDSNTL DVAEDVSDLE MIHLEMNDED IKAVELGIVQ 360 NTETKQKDGT SMETEKDKMQ NEQSFWFMSQ NEESQNECEV MIGSISVPVK NCPIHTRRTK 420 THDHAECDLS LGSKTSVPSD DWVHVTRRGK GPKGRQDNEE RASVKVGDQN LSCATSVQLY 480 ADGKSPSHQL PDCNTHAKVL PFSSGTAKTF LTKRWNEVVS GDHVKLVISA VPKSPGSPST 540 HSNLQKSAPP PSAPKKHSIV GENQRRR

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MPTARLSTVG SSDAMESVEG NDTLYTLISQ ATGKDPIVSG DKPIQWIQLL HALEQPDLPY  60
WPIVTPVKVQ MHKCEKCSRE FFSSINYRRH LRLHRRALNF DKESRKYRDL LGAFWNKLSL  120
EEVKEVASLN DISLKDIPGT LLVKTLTESL QTSSAWMWSL PTVYMKAGTT LMDIIEAKPS  180
RLPISSLELF SVLDDASEGT FLCAGTADSM QKYLFDDEVT KVCLELRNLA ACICFAFEQK  240
LVKAWIADKE AEALRCQKLL VEEEEAAQRR QTELLEKKRQ KKLRQKELKA KDQMSEGKAS  300
LVGSADSSEN PLVAEISSPP TLFDSDSNTL DVAEDVSDLE MIHLEMNDED IKAVELGIVQ  360
NTETKQKDGT SMETEKDKMQ NEQSFWFMSQ NEESQNECEV MIGSISVPVK NCPIHTRRTK  420
THDHAECDLS LGSKTSVPSD DWVHVTRRGK GPKGRQDNEE RASVKVGDQN LSCATSVQLY  480
ADGKSPSHQL PDCNTHAKVL PFSSGTAKTF LTKRWNEVVS GDHVKLVISA VPKSPGSPST  540
HSNLQKSAPP PSAPKKHSIV GENQRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	EKKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-85	C2H2 family protein