PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177347.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33830.5 Da    PI: 4.5061
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1958111356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_019177347.1  58 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                     56689************************************************9 PP
2HD-ZIP_I/II129.41.4e-4157149193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L+ ++e+L +++++
  XP_019177347.1  57 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNYESLQLDKESLLKQIRD 149
                     69*************************************************************************************999976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MKRSLGSSDS LGALMSICPP TTDDPSQGNS SHVYAGEFQS MLEGLDEEDG GGGRVAEKKR  60
RLSVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDSLK HNYESLQLDK ESLLKQIRDL KTKLNGEMKE EDKDAKPNSD EIELNFEAAA  180
AAAAAAVPAD FKDGSSDSDS SVILNEETSS YHSSEAFLIS HEPFPDCFKL SEHFKPATAV  240
LADAAAVHKL AYPPLQLVKI EEQFSSEESC STLFSDEQAP TLPWYCPDPD PESWNNWKED  300
EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15887KKRRLSVEQVKALEKNFEVENKLEPERKVK
2106114RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.16e-61HD-ZIP family protein