PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177211.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 559aa    MW: 63173.1 Da    PI: 4.6371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.86.8e-751865401373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                     l++lLl  A+av++g+  la+ ++ +l++l      ++   ++Rl  yft++L  + ++            e+++  ++ +++a+++++e+sP++
  XP_019177211.1 186 LIDLLLMGAQAVQAGNRDLASIIVLKLNNLhlsgEEEESGHLERLSLYFTQGLVFKTMN----------YGEQKW--QEGSMSAFQMLQEISPYI 268
                     57899***********************99753223333589***********876666..........344443..45678899********** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     kf+h+taNqaIlea++++++vHiiDfdi++G+QWp+L+ +La+R++   slRiT++++ e++s   +++tg+rL++fA++++++f f+ ++ ++ 
  XP_019177211.1 269 KFAHFTANQAILEATQNQKEVHIIDFDIMEGIQWPPLMAELADRENA--SLRITAMVA-ETQSWAHTQQTGKRLHEFANSINLSFAFDQILLTKE 360
                     ********************************************776..9*******9.668999***********************9855543 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklp 276
                     +dl  e+++   +  +a  +++qlh  ++e+  ++     +L+ ++  +P+++++ve+e    + + s sF+e f ea+++y++l dsl     +
  XP_019177211.1 361 QDL--EQIQSLGNHPIANLMIHQLHMPHRENPLIK----IFLNGLR--NPQMIIMVEEElfkiSRTPSMSFVEFFREAIHHYTSLSDSLqGGFCG 447
                     333..555444444555445555555444445555....5*****9..7**********7664455788********************555556 PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + +++++E+e+lg++i++ v++  + +rer++    W++ + +  GFkpvp+s+ +++qak+l++ ++  g+ v++e+  l l+Wk+rpL+++
  XP_019177211.1 448 GYKLAQRVIEKEFLGPRIMDSVSKFPSGKRERQT----WSQGVYSlKGFKPVPMSSCNVSQAKYLVSLFN-GGFWVQHEHCRLALCWKSRPLITA 537
                     66699**********************9777776....**9876549***********************.89********************** PP

            GRAS 371 SaW 373
                     S W
  XP_019177211.1 538 SIW 540
                     *** PP
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    
MEFESFEVIS FSPTYIHEFQ EHGSEVCTDS SVSSWVVDYE QKYGLLEACM GSSGFWVADC  60
GQEYGLKVHT GSSVGSPVTE CGQEYELEVC ADNSVGYWAT DRWKDQSHDY SNDVDIQECL  120
QLETDIMDLD FIDEDAVFSQ NSREQETAVT PTGEAGACGF LTPENCSSHL RTIQEEGLME  180
ETKTSLIDLL LMGAQAVQAG NRDLASIIVL KLNNLHLSGE EEESGHLERL SLYFTQGLVF  240
KTMNYGEQKW QEGSMSAFQM LQEISPYIKF AHFTANQAIL EATQNQKEVH IIDFDIMEGI  300
QWPPLMAELA DRENASLRIT AMVAETQSWA HTQQTGKRLH EFANSINLSF AFDQILLTKE  360
QDLEQIQSLG NHPIANLMIH QLHMPHRENP LIKIFLNGLR NPQMIIMVEE ELFKISRTPS  420
MSFVEFFREA IHHYTSLSDS LQGGFCGGYK LAQRVIEKEF LGPRIMDSVS KFPSGKRERQ  480
TWSQGVYSLK GFKPVPMSSC NVSQAKYLVS LFNGGFWVQH EHCRLALCWK SRPLITASIW  540
VPTTSSISHS SLSRSTSFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-46GRAS family protein