PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177030.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 666aa MW: 77368.2 Da PI: 6.9933

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	56	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs+ g+++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH+++ XP_019177030.1 56 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSNAGFKKKSGAN-----HPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHNHPVN 140 6*******************999**************9988.....9********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MEAVSLNSKP VFEDGDEYED EGECTLVEHE NGIHETQMPP LPTVGLEFVS FDEAYDFYNV 60 YAKEQGFGIR VSNSWFRSKR KERYRAKLSC SNAGFKKKSG ANHPRPETRT GCPAMIVIKL 120 VDSKRWRIVE VELQHNHPVN PEIKRFYKSH KKMILAAKQM GQSKPVTEVH TIKLYRTDVI 180 DAPGDSYPEV NERDAGNPVN LSKHLELKDG DSHAVYNYFC RMKLTNPNFF YLMDLDDEGH 240 LRNVFWADAR SRAAYNYFSD IIAIDTTSLT NKYEIPLISF IGVNHHGQSV LLGCGFLGHE 300 SVEHFVWMFK SWLTSMLGRH PQVIITDQSK PLQTAVSEVF PQARHCYCLS YIMRRVPEKL 360 GGLKGYELIK RQLNKAVYSS LKIVEFESFW REMIVQHGLN DNKWLQLLYE DRHKWVPVYL 420 KDVFSVGMIP IKENESLGAF FDGYVHKHTT FKEFVDRYDL ALQRKHLQEA MADHESRNPV 480 FELKTKCNFE LQLSKVYTKD VFKNFQTEVE GMFSCFHTRQ VSVNGPIMTF VVKERVEAEG 540 GVKEVRQYEV LYETTRMEVR CICSLFNFKG YLCRHALNVL NYNGVEEIPS QYILPRWHRD 600 FKRKFPGDFG LSDIDLDDPA KLYTSLYGRA LQVVEEGTQS QEHYQAVLQE LETLLNKFSV 660 VQDNLV

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MEAVSLNSKP VFEDGDEYED EGECTLVEHE NGIHETQMPP LPTVGLEFVS FDEAYDFYNV  60
YAKEQGFGIR VSNSWFRSKR KERYRAKLSC SNAGFKKKSG ANHPRPETRT GCPAMIVIKL  120
VDSKRWRIVE VELQHNHPVN PEIKRFYKSH KKMILAAKQM GQSKPVTEVH TIKLYRTDVI  180
DAPGDSYPEV NERDAGNPVN LSKHLELKDG DSHAVYNYFC RMKLTNPNFF YLMDLDDEGH  240
LRNVFWADAR SRAAYNYFSD IIAIDTTSLT NKYEIPLISF IGVNHHGQSV LLGCGFLGHE  300
SVEHFVWMFK SWLTSMLGRH PQVIITDQSK PLQTAVSEVF PQARHCYCLS YIMRRVPEKL  360
GGLKGYELIK RQLNKAVYSS LKIVEFESFW REMIVQHGLN DNKWLQLLYE DRHKWVPVYL  420
KDVFSVGMIP IKENESLGAF FDGYVHKHTT FKEFVDRYDL ALQRKHLQEA MADHESRNPV  480
FELKTKCNFE LQLSKVYTKD VFKNFQTEVE GMFSCFHTRQ VSVNGPIMTF VVKERVEAEG  540
GVKEVRQYEV LYETTRMEVR CICSLFNFKG YLCRHALNVL NYNGVEEIPS QYILPRWHRD  600
FKRKFPGDFG LSDIDLDDPA KLYTSLYGRA LQVVEEGTQS QEHYQAVLQE LETLLNKFSV  660
VQDNLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein