PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176858.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 540aa MW: 58950 Da PI: 7.3872

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68.3	1.3e-21	226	275	4	54
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +Wt eLHe+F++av+qL G + Pk+ilelm+v+gLt+ +v+SHLQk R XP_019176858.1 226 TEWTVELHEKFMNAVHQL-GDGRCYPKEILELMNVPGLTRMQVASHLQKCR 275 58**************.9***************************98 PP
2	Myb_DNA-binding	39.9	1e-12	227	274	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 WT e++e++ +av+qlG g +k I + m+ g+t+ q+ s++qk XP_019176858.1 227 EWTVELHEKFMNAVHQLGDGrcYPKEILELMNvPGLTRMQVASHLQKC 274 6*********************************************97 PP
3	Response_reg	48.5	4.7e-17	30	137	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl++d +++++ ++l+++ y +v+++d +++al l ke+++D ++ i+ p+m+G++ll++ + +l +i++ +++e e+a++ ++ G XP_019176858.1 30 VLLSDHDHKFLASTVEMLKRHFY-KVTVVDCASDALSVLsqKEQKFDAVIANINSPDMQGFKLLRQAVSM--DLIVILLCDEEEAEMAVRLIEHG 121 79999999*************.***********655555**************9987775..5****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a l Kp+ +e l + XP_019176858.1 122 AFLLLQKPMCQETLKN 137 ******99888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MWRLPEYQIN NPYVNIPMAS HHRVTNGIHV LLSDHDHKFL ASTVEMLKRH FYKVTVVDCA 60 SDALSVLSQK EQKFDAVIAN INSPDMQGFK LLRQAVSMDL IVILLCDEEE AEMAVRLIEH 120 GAFLLLQKPM CQETLKNLWQ HVVRERNLQR GKEMMLMEKN NRELAVINNG GGGADRGKGV 180 RVEENENYEM SYRGKGKRTR QQQSLNESTQ MMMNPGLARV KRKTCTEWTV ELHEKFMNAV 240 HQLGDGRCYP KEILELMNVP GLTRMQVASH LQKCRNDNWR APEERRAPPT SSASLASESA 300 SRNEQRRFGT MPRLTAAAAA AAAAAAAAAG NSQTERQQLE STTSPEVQSS QSNGSGRGDS 360 SQTQIHRQYL TIGDVSKLES SSPPSIVRPV AASTSAAAAA IAAAVATFDA TSGQASIVGS 420 LNYGSGGGLQ GLGGGSGGGG GSLFGNKDNF SDNPSNTTTG DDSYATPPPP RLRTLQSEEF 480 FTFDVDYEYL INGFPDNNAR QGGVGLQAPN HNNTSFNIGQ RQEANKAQTS EMMNVAKMSP

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MWRLPEYQIN NPYVNIPMAS HHRVTNGIHV LLSDHDHKFL ASTVEMLKRH FYKVTVVDCA  60
SDALSVLSQK EQKFDAVIAN INSPDMQGFK LLRQAVSMDL IVILLCDEEE AEMAVRLIEH  120
GAFLLLQKPM CQETLKNLWQ HVVRERNLQR GKEMMLMEKN NRELAVINNG GGGADRGKGV  180
RVEENENYEM SYRGKGKRTR QQQSLNESTQ MMMNPGLARV KRKTCTEWTV ELHEKFMNAV  240
HQLGDGRCYP KEILELMNVP GLTRMQVASH LQKCRNDNWR APEERRAPPT SSASLASESA  300
SRNEQRRFGT MPRLTAAAAA AAAAAAAAAG NSQTERQQLE STTSPEVQSS QSNGSGRGDS  360
SQTQIHRQYL TIGDVSKLES SSPPSIVRPV AASTSAAAAA IAAAVATFDA TSGQASIVGS  420
LNYGSGGGLQ GLGGGSGGGG GSLFGNKDNF SDNPSNTTTG DDSYATPPPP RLRTLQSEEF  480
FTFDVDYEYL INGFPDNNAR QGGVGLQAPN HNNTSFNIGQ RQEANKAQTS EMMNVAKMSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	8e-39	ARR-B family protein