PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176343.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 270aa MW: 30917.9 Da PI: 8.6528

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.9	1.2e-40	74	206	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++ kdrh ki T++g+RdRRvRls+ +a++fFdLqd LGfdk+skt++WL+ q+k ai el ++++ ++ ++s++ ++ s+k++++++ XP_019176343.1 74 TKNKDRHTKILTAQGPRDRRVRLSICIARKFFDLQDTLGFDKPSKTLNWLFAQSKLAIEELFHATTTHT-KMpVEDSQEMGRRAKDSPKEEEEEE 167 678*********************************************************9966666.4523333333334455556666666 PP TCP 96 kskksqksaasalnlakesrakarararertrekmrikn 134 +++++++s + +lak++rakar+rar rt +km+ k+ XP_019176343.1 168 EEEEEEESIGVFTDLAKQTRAKARERARARTIKKMCFKE 206 888888888889**********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MFSSTDANPL HPQFPVASTT FHGGTDHHQT LLPQLQDHHH LFPNTHMLVS PNNNVNNTKP 60 LNSYVFPSSC RRRTKNKDRH TKILTAQGPR DRRVRLSICI ARKFFDLQDT LGFDKPSKTL 120 NWLFAQSKLA IEELFHATTT HTKMPVEDSQ EMGRRAKDSP KEEEEEEEEE EEEESIGVFT 180 DLAKQTRAKA RERARARTIK KMCFKELSEA KMLLAATETS PLHKNELTTK ESITPRICSV 240 WDIPKHLMMP KGFRNGGYSQ NVSSSQEGLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	9e-26	TCP family protein