PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176249.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 318aa    MW: 35224.5 Da    PI: 6.772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d +k+ G g+W++ ++  g+ R++k+c++rw +yl
   XP_019176249.1 14 KGPWTPEEDEKLIDFIKKNGQGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding47.44.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_019176249.1  67 RGPFSSEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRTPCCDKK GLKKGPWTPE EDEKLIDFIK KNGQGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SSEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
IDPQTHEPSS ESIGPQRRLP TTPSARHMAQ WESARLEAEA RLSRESKLLV PSTIGGSEAD  180
FFLRIWNSEI GEAFRKFKKG VKFACQSPIS QASSSTKYGS ASGTTTEMDI TLAGSADAGG  240
NPNEDPEGKC NRSYTDDPLQ GSETSCSDEL EDSSESALQL LLDFPTYNDM SFLGHTDTYS  300
IYPAFLTEST LNCSSAEH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-117MYB family protein