PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019176188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18178.1 Da PI: 9.4085 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.9 | 1.1e-07 | 15 | 52 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 nk++r+ ++ k ++ +l +ELS+LC++e+ i++s XP_019176188.1 15 NKTQRKSSYEKQKKSMLNMLNELSILCGVEAGAILYSR 52 9*******************************999995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MRRIGRRVRL GFMVNKTQRK SSYEKQKKSM LNMLNELSIL CGVEAGAILY SRFEEGPVVW 60 PSVEDMEESI GRFLEKRFEK LGTQLLNLKR VNRETEMGLA MYQILQGYQL NNSLSFIDLN 120 DLGWVINTYL AEIDNKVKVE AIINNSSIIL ASSALAPTQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31630.1 | 1e-21 | M-type_MADS family protein |