PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175663.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 829aa MW: 91018.6 Da PI: 4.4552

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	322	342	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G+C G++C+F H+ XP_019175663.1 322 ICDFFAK-GWCIKGSSCRFLHV 342 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
MSSAAAAVDP PHNTVDPASK SEQEMEDEEY EYEYEEIEEE IEEEIEVEEE EEVEEVEEEE 60 EEGEKEDVEE AGADSDQELA PSNGEDSGKG TAEAGIAEAA AKLFNEHDHK KQDLEEEVAR 120 KEGADNAEEL TKLNEEDHAE GNVEVEETAA AEIAEGLSQC NKEGHEKENR QVLEPARLEK 180 LLGSDSATPQ ESVAHPPLDA SVVRDSDNNN GTASPDDTNE GKKSTVDGNK THRGDVNISL 240 HEGGVMPEKA FGCEINAAML DVDPSSNGII GVQYSKDMAD QEAAQAVEDM EISPRSDVPQ 300 LRPRSLSPGA EFNDKNKRPA IICDFFAKGW CIKGSSCRFL HVRDNAANSS KEGSVDASKL 360 KGILAGEGLK YTTEISAKNM HSDLGLSRIE HEATLRLKSG IEEVPLDKNL SVSDTSLKDK 420 DIGREYLEHK PYLANYNHSS SMLKDYSQTF GNNSFGRGLP SENCRNVGYS SYFSHLEGIR 480 SKGSQFLHDD HPSNCPVERV PLYPSASWNA SPLGLQKPIE GGKELSASGS VSFKHKSPPF 540 TGSESTLISH LDLSAPTHHS SLYKPNLSFD NWEPSVPFQP SFLITQRMLS EASRYDPIRD 600 SIEQTIAQDK PSQFPFSGQG ASASGTHVCE NADPVATGNL GPEQSSNKHS VSSHSSHKDA 660 VPRNLSEKEK ELMDTAGAHQ ENIYYTSLKE KQLPKSADFG DTTEADKTHC SNDTVQKNGA 720 QYKMELKVES VKSGNDVDGL VHQDSRALKQ FESAVVEFIK ELLKPTWREG LLSRDAYKAI 780 VKKTKANFLS TMQPEQIPDN SDSVKEYLSF AQPKLEKLVL GYVDKYGRS

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

MSSAAAAVDP PHNTVDPASK SEQEMEDEEY EYEYEEIEEE IEEEIEVEEE EEVEEVEEEE  60
EEGEKEDVEE AGADSDQELA PSNGEDSGKG TAEAGIAEAA AKLFNEHDHK KQDLEEEVAR  120
KEGADNAEEL TKLNEEDHAE GNVEVEETAA AEIAEGLSQC NKEGHEKENR QVLEPARLEK  180
LLGSDSATPQ ESVAHPPLDA SVVRDSDNNN GTASPDDTNE GKKSTVDGNK THRGDVNISL  240
HEGGVMPEKA FGCEINAAML DVDPSSNGII GVQYSKDMAD QEAAQAVEDM EISPRSDVPQ  300
LRPRSLSPGA EFNDKNKRPA IICDFFAKGW CIKGSSCRFL HVRDNAANSS KEGSVDASKL  360
KGILAGEGLK YTTEISAKNM HSDLGLSRIE HEATLRLKSG IEEVPLDKNL SVSDTSLKDK  420
DIGREYLEHK PYLANYNHSS SMLKDYSQTF GNNSFGRGLP SENCRNVGYS SYFSHLEGIR  480
SKGSQFLHDD HPSNCPVERV PLYPSASWNA SPLGLQKPIE GGKELSASGS VSFKHKSPPF  540
TGSESTLISH LDLSAPTHHS SLYKPNLSFD NWEPSVPFQP SFLITQRMLS EASRYDPIRD  600
SIEQTIAQDK PSQFPFSGQG ASASGTHVCE NADPVATGNL GPEQSSNKHS VSSHSSHKDA  660
VPRNLSEKEK ELMDTAGAHQ ENIYYTSLKE KQLPKSADFG DTTEADKTHC SNDTVQKNGA  720
QYKMELKVES VKSGNDVDGL VHQDSRALKQ FESAVVEFIK ELLKPTWREG LLSRDAYKAI  780
VKKTKANFLS TMQPEQIPDN SDSVKEYLSF AQPKLEKLVL GYVDKYGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-39	C3H family protein