PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175011.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25751.5 Da PI: 9.092

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.1	3.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr g++KKAeEL vLCda+va+i+fsstgkl++++s XP_019175011.1 9 KKIDNIAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSSTGKLFDFAS 59 689*********************************************986 PP
2	K-box	54.2	6.3e-19	82	171	14	100
K-box 14 aeslqqela...kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e lqqe + +L kei+ re+R++ GedLe Lsl+eL++L q+L+ +l+++ ++K+e ++++i +lq k el een++L+++++e XP_019175011.1 82 LEFLQQENSlqvRLSKEISDKTRELRRMRGEDLEGLSLEELEELAQKLQVGLNRVSETKDEQIRNEIATLQYKGAELMEENNRLKQRVAE 171 5566666533338999999999****************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MTRKKIKIKK IDNIAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSS TGKLFDFASS 60 SMKHILQKYV SHSSNIKKYQ PLEFLQQENS LQVRLSKEIS DKTRELRRMR GEDLEGLSLE 120 ELEELAQKLQ VGLNRVSETK DEQIRNEIAT LQYKGAELME ENNRLKQRVA EMNNDRRNGL 180 IIADMDRMIL EEGQTSESIT NNSTTQPPHL QAADCSDTLL KLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	7e-63	MIKC_MADS family protein