PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174887.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 1079aa MW: 119264 Da PI: 6.5864

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.7	2e-22	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_019174887.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpgldytMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 217 99**************************996555444..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_019174887.1 218 KQQLLLGIRRA 228 8889**997 PP
2	Auxin_resp	117.5	1.1e-38	253	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr L+ XP_019174887.1 253 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRKLQ 336 799*******************************9******************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence
MKTPPPAANA NPPEAEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKKD 60 VDAQIPNYPN LPSMLICYLH NVTLHADPET DEVYAQMTLQ PVPSIDKEAL LRSDLSTKVN 120 KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPGLDYTM QPPAQELVAR DLHDNVWTFR 180 HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNLSSSVL 240 SSDSMHIGIL AAAAHASANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYGN QVSLGMRFRM 300 MFETEESGTR RYMGTITGIS DLDPVRWKGS QWRKLQVGWD ESTAGERRSR VSIWEIEPVT 360 APFFLCPTPP FFRAKRPRQP GMPDDDASDL DGFFKRTMPW IGDDFGMKDP QALPGLSLAQ 420 WMNMQSNPSL TNTMQPNYLH SLSGSVLQNL AGGDLTRQLG LPGQQIPQQS NLQFNSPRPG 480 QQVQQVDQLQ KMSPAAMNPL GSIMQPQQQL TDVGQQPRQN LVNQTMPTSQ VQAQLLQAQG 540 LVQPQNVLQQ NQLQRNLPQS LPPQPPQQQQ QQILNQNQHP SFMPSSHPSN PITQQMHLPD 600 NQIQFQLLQK LQQQQQQQQS LLAQQSTLQQ PSQLSQLPDP QKHVLDASQS LSRSMSTSQV 660 QDNVSLPQSH MNMMMNNTQT NLRFSQQPQL PKLAELPGPV GPPTTNQLSA TGGGHSIITD 720 DVPSCSTSPS TNNCPNGVQA VVNGRVQRST AVGDDITQSS ATLLSSSGLE AMSASSNLAK 780 DIHQKADVKN QFNMSKSQNQ GFLTPPVYHN GSAAQLDYLD SSSSATSICL SQNDVQLQPG 840 GTNPMSFTSQ PMLFRDISHD GEVQGDQRNN NMPFATNIDN QLGMPMMPDP LIPKNLVGSE 900 NNLSSGGGML SNYENPKEAQ PELSSSMVSQ SFGVPDMGFN SIDSTINDGS FMNRSTWAPQ 960 PPIPRLRTYT KVYKRGAVGR SIDIMRYSGY EELKQDLARR FGIEGQLEDR QRIGWKLVYV 1020 DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNSVLHNQA CSSSDGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence

MKTPPPAANA NPPEAEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQVAASMKKD  60
VDAQIPNYPN LPSMLICYLH NVTLHADPET DEVYAQMTLQ PVPSIDKEAL LRSDLSTKVN  120
KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPGLDYTM QPPAQELVAR DLHDNVWTFR  180
HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNLSSSVL  240
SSDSMHIGIL AAAAHASANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYGN QVSLGMRFRM  300
MFETEESGTR RYMGTITGIS DLDPVRWKGS QWRKLQVGWD ESTAGERRSR VSIWEIEPVT  360
APFFLCPTPP FFRAKRPRQP GMPDDDASDL DGFFKRTMPW IGDDFGMKDP QALPGLSLAQ  420
WMNMQSNPSL TNTMQPNYLH SLSGSVLQNL AGGDLTRQLG LPGQQIPQQS NLQFNSPRPG  480
QQVQQVDQLQ KMSPAAMNPL GSIMQPQQQL TDVGQQPRQN LVNQTMPTSQ VQAQLLQAQG  540
LVQPQNVLQQ NQLQRNLPQS LPPQPPQQQQ QQILNQNQHP SFMPSSHPSN PITQQMHLPD  600
NQIQFQLLQK LQQQQQQQQS LLAQQSTLQQ PSQLSQLPDP QKHVLDASQS LSRSMSTSQV  660
QDNVSLPQSH MNMMMNNTQT NLRFSQQPQL PKLAELPGPV GPPTTNQLSA TGGGHSIITD  720
DVPSCSTSPS TNNCPNGVQA VVNGRVQRST AVGDDITQSS ATLLSSSGLE AMSASSNLAK  780
DIHQKADVKN QFNMSKSQNQ GFLTPPVYHN GSAAQLDYLD SSSSATSICL SQNDVQLQPG  840
GTNPMSFTSQ PMLFRDISHD GEVQGDQRNN NMPFATNIDN QLGMPMMPDP LIPKNLVGSE  900
NNLSSGGGML SNYENPKEAQ PELSSSMVSQ SFGVPDMGFN SIDSTINDGS FMNRSTWAPQ  960
PPIPRLRTYT KVYKRGAVGR SIDIMRYSGY EELKQDLARR FGIEGQLEDR QRIGWKLVYV  1020
DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNSVLHNQA CSSSDGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein