PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174886.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 1080aa MW: 119335 Da PI: 6.5864

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.6	2e-22	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_019174886.1 128 FCKTLTASDTSTHGGFSVPRRAAEKIfpgldytMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 218 99**************************996555444..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_019174886.1 219 KQQLLLGIRRA 229 8889**997 PP
2	Auxin_resp	117.5	1.1e-38	254	337	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr L+ XP_019174886.1 254 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRKLQ 337 799*******************************9******************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence
MKTPPPAANA NPPEAAEKKS INPELWQACA GPLVNLPAAG THVVYFPQGH SEQVAASMKK 60 DVDAQIPNYP NLPSMLICYL HNVTLHADPE TDEVYAQMTL QPVPSIDKEA LLRSDLSTKV 120 NKPQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPGLDYT MQPPAQELVA RDLHDNVWTF 180 RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNLSSSV 240 LSSDSMHIGI LAAAAHASAN NSPFTVFYNP RASPSEFVIP LAKYYKAVYG NQVSLGMRFR 300 MMFETEESGT RRYMGTITGI SDLDPVRWKG SQWRKLQVGW DESTAGERRS RVSIWEIEPV 360 TAPFFLCPTP PFFRAKRPRQ PGMPDDDASD LDGFFKRTMP WIGDDFGMKD PQALPGLSLA 420 QWMNMQSNPS LTNTMQPNYL HSLSGSVLQN LAGGDLTRQL GLPGQQIPQQ SNLQFNSPRP 480 GQQVQQVDQL QKMSPAAMNP LGSIMQPQQQ LTDVGQQPRQ NLVNQTMPTS QVQAQLLQAQ 540 GLVQPQNVLQ QNQLQRNLPQ SLPPQPPQQQ QQQILNQNQH PSFMPSSHPS NPITQQMHLP 600 DNQIQFQLLQ KLQQQQQQQQ SLLAQQSTLQ QPSQLSQLPD PQKHVLDASQ SLSRSMSTSQ 660 VQDNVSLPQS HMNMMMNNTQ TNLRFSQQPQ LPKLAELPGP VGPPTTNQLS ATGGGHSIIT 720 DDVPSCSTSP STNNCPNGVQ AVVNGRVQRS TAVGDDITQS SATLLSSSGL EAMSASSNLA 780 KDIHQKADVK NQFNMSKSQN QGFLTPPVYH NGSAAQLDYL DSSSSATSIC LSQNDVQLQP 840 GGTNPMSFTS QPMLFRDISH DGEVQGDQRN NNMPFATNID NQLGMPMMPD PLIPKNLVGS 900 ENNLSSGGGM LSNYENPKEA QPELSSSMVS QSFGVPDMGF NSIDSTINDG SFMNRSTWAP 960 QPPIPRLRTY TKVYKRGAVG RSIDIMRYSG YEELKQDLAR RFGIEGQLED RQRIGWKLVY 1020 VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNSVLHNQ ACSSSDGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence

MKTPPPAANA NPPEAAEKKS INPELWQACA GPLVNLPAAG THVVYFPQGH SEQVAASMKK  60
DVDAQIPNYP NLPSMLICYL HNVTLHADPE TDEVYAQMTL QPVPSIDKEA LLRSDLSTKV  120
NKPQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPGLDYT MQPPAQELVA RDLHDNVWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNLSSSV  240
LSSDSMHIGI LAAAAHASAN NSPFTVFYNP RASPSEFVIP LAKYYKAVYG NQVSLGMRFR  300
MMFETEESGT RRYMGTITGI SDLDPVRWKG SQWRKLQVGW DESTAGERRS RVSIWEIEPV  360
TAPFFLCPTP PFFRAKRPRQ PGMPDDDASD LDGFFKRTMP WIGDDFGMKD PQALPGLSLA  420
QWMNMQSNPS LTNTMQPNYL HSLSGSVLQN LAGGDLTRQL GLPGQQIPQQ SNLQFNSPRP  480
GQQVQQVDQL QKMSPAAMNP LGSIMQPQQQ LTDVGQQPRQ NLVNQTMPTS QVQAQLLQAQ  540
GLVQPQNVLQ QNQLQRNLPQ SLPPQPPQQQ QQQILNQNQH PSFMPSSHPS NPITQQMHLP  600
DNQIQFQLLQ KLQQQQQQQQ SLLAQQSTLQ QPSQLSQLPD PQKHVLDASQ SLSRSMSTSQ  660
VQDNVSLPQS HMNMMMNNTQ TNLRFSQQPQ LPKLAELPGP VGPPTTNQLS ATGGGHSIIT  720
DDVPSCSTSP STNNCPNGVQ AVVNGRVQRS TAVGDDITQS SATLLSSSGL EAMSASSNLA  780
KDIHQKADVK NQFNMSKSQN QGFLTPPVYH NGSAAQLDYL DSSSSATSIC LSQNDVQLQP  840
GGTNPMSFTS QPMLFRDISH DGEVQGDQRN NNMPFATNID NQLGMPMMPD PLIPKNLVGS  900
ENNLSSGGGM LSNYENPKEA QPELSSSMVS QSFGVPDMGF NSIDSTINDG SFMNRSTWAP  960
QPPIPRLRTY TKVYKRGAVG RSIDIMRYSG YEELKQDLAR RFGIEGQLED RQRIGWKLVY  1020
VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSLDG DFGNSVLHNQ ACSSSDGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein