PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174662.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 894aa    MW: 99069.5 Da    PI: 4.8524
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3789.9e-25113214199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++
  XP_019174662.1 113 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEK 204
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_019174662.1 205 SQLMLGVRRA 214
                     778***9997 PP
2Auxin_resp115.45.2e-38239322183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++s+Fv++++k++k+++ +++s+GmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+
  XP_019174662.1 239 AAHAAANRSPFTIFYNPRACPSKFVIPLAKYRKSIYgTQLSAGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRCLQ 322
                     79**********************************9**********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    
MGSVDEKVRP GGLVSGGNTL LEEMKLLKEM QETTGIKKHI NSELWHACAG PLATLPQVGS  60
LVYYFPQGHS EQADKDTDEI YAQMSLQPVN SEKDVFPIPD FGLKPSKHPT EFFCKTLTAS  120
DTSTHGGFSV PRRAAEKLFP PLDYSMQPPT QELVVRDLHD NTWTFRHIYR GQPKRHLLTT  180
GWSMFVGAKR LRAGDSVLFI RDEKSQLMLG VRRANRQQTT LPSSVLSADS MHIGVLAAAA  240
HAAANRSPFT IFYNPRACPS KFVIPLAKYR KSIYGTQLSA GMRFGMMFET EESGKRRYMG  300
TIIGISDLDP LRWPGSKWRC LQVEWDEPGC GDKQNRVSPW EVETPESLFI FPSLTGGLKR  360
PFQPAFLGTQ TEWDSLLSRP FIRGPENVYG DIQCSSISNM WSEQVMKMLL RPQGVNNPGF  420
VAPTLQETIA HETITKAAIP QEARNVMPGA TIKQKPELIP VEETSTQIES NEPKNPLQQV  480
NQLQSPRKLE NQTVPAIPSE VTKSEPMLTS DQLSRLQSLG QCNDEKLPLT PTNAHNQVTR  540
GAFLTPNNDS FPIQGSPWLM PPQFDSQAPQ IDPAIMNGFL QCPDNREWGS YLPSGFLRTS  600
EPFSTLRKPD QQPFMLPDAV NPVGQELWDD AKCFPQGNLE ALLPSGEDIS NLHSMADSYG  660
LKDLSSNQSQ GQSDYSCLNF DGSNSGSVVI DPCVSSAVLD EFCTLRNGDF QNPADYLVGN  720
FSSSQDVQSQ ITSVSLADSQ NFSLQDFADN SGGASSSNVE FDESALLQNS TWQPVAPRVR  780
TYTKIQKAGS VGRSIDVSSF SNYYELRSEI ERMFGLEGLL NDSKGSDWKL VYVDFENDVL  840
LVGDDPWEEF VGCVRCIRIL SPSEVQQMGE EGMQILNANA MQAAVHVSAT EGCH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein