PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174661.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 927aa    MW: 102669 Da    PI: 4.9703
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++
  XP_019174661.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEK 237
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_019174661.1 238 SQLMLGVRRA 247
                     778***9997 PP
2Auxin_resp115.35.4e-38272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++s+Fv++++k++k+++ +++s+GmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+
  XP_019174661.1 272 AAHAAANRSPFTIFYNPRACPSKFVIPLAKYRKSIYgTQLSAGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRCLQ 355
                     79**********************************9**********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    
MGSVDEKVRP GGLVSGGNTL LEEMKLLKEM QETTGIKKHI NSELWHACAG PLATLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LPSQLLCQVH NVTLHADKDT DEIYAQMSLQ  120
PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL  240
MLGVRRANRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSKFVIPLA  300
KYRKSIYGTQ LSAGMRFGMM FETEESGKRR YMGTIIGISD LDPLRWPGSK WRCLQVEWDE  360
PGCGDKQNRV SPWEVETPES LFIFPSLTGG LKRPFQPAFL GTQTEWDSLL SRPFIRGPEN  420
VYGDIQCSSI SNMWSEQVMK MLLRPQGVNN PGFVAPTLQE TIAHETITKA AIPQEARNVM  480
PGATIKQKPE LIPVEETSTQ IESNEPKNPL QQVNQLQSPR KLENQTVPAI PSEVTKSEPM  540
LTSDQLSRLQ SLGQCNDEKL PLTPTNAHNQ VTRGAFLTPN NDSFPIQGSP WLMPPQFDSQ  600
APQIDPAIMN GFLQCPDNRE WGSYLPSGFL RTSEPFSTLR KPDQQPFMLP DAVNPVGQEL  660
WDDAKCFPQG NLEALLPSGE DISNLHSMAD SYGLKDLSSN QSQGQSDYSC LNFDGSNSGS  720
VVIDPCVSSA VLDEFCTLRN GDFQNPADYL VGNFSSSQDV QSQITSVSLA DSQNFSLQDF  780
ADNSGGASSS NVEFDESALL QNSTWQPVAP RVRTYTKIQK AGSVGRSIDV SSFSNYYELR  840
SEIERMFGLE GLLNDSKGSD WKLVYVDFEN DVLLVGDDPW EEFVGCVRCI RILSPSEVQQ  900
MGEEGMQILN ANAMQAAVHV SATEGCH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein