PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019174340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 35276.1 Da PI: 10.311 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 25 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ XP_019174340.1 25 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 70 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.5e-19 | 77 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ + XP_019174340.1 77 RRPFSEEEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 121 679*******************.*********.***********987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MVETTGGGGG GASASSDDSS RTCPRGHWRP AEDEKLRQLV EQYGPQNWNS IAEKLQGRSG 60 KSCRLRWFNQ LDPRINRRPF SEEEEERLVA AHRIHGNKWA LISRLFPGRT DNAVKNHWHV 120 LMARRQREQS KLSVKRTYQQ VFNNVNVNDT NVFRRRYKSP DPSNKIISFF EFQNNPDSSR 180 PTFSLSKYTP PAPAPYSSPP LRPPSSDYSL LRHHKNSTNK NLGFSLVGSH GGVIRSDPPN 240 LKPWNFLNYS STFNDGAKNH EREYLFREKK KKERNEQQDK EDDEGEDKRE RRDVTFIDFL 300 GVGSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 273 | REKKKKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-67 | MYB family protein |