PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174335.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 228aa MW: 25626.2 Da PI: 9.8716

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_019174335.1 89 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	119.7	1.3e-38	89	150	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq XP_019174335.1 89 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 150 8***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MKVHQFGRSG LMFDHDNAAT SLSLGCKRLR PLAPKLAVDG GAITISPPVF DLKSFIRPES 60 SSPTKLGSPE TKKDSPQATA AVETHPGGTR WNPTQEQIGI LEMLYRGGMR TPNAQQIEQI 120 TAQLSKYGKI EGKNVFYWFQ NHKARERQKQ KRNTALLAAG GGLNHTPTTP PPTLPFDLIV 180 EEESPKKRRC RSWAYEFLEM EEKRSSCCRR EEGDRTLELF PLHPELGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-71	WOX family protein