PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174228.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 291aa    MW: 32946.4 Da    PI: 4.9151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-102162561055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_019174228.1 216 RRRREKINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 256
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MELEGAAFFD EEWDSLTKMF STENVDFLVQ LQDDNFFLND HENEAPLSFW QAVEANKLIN  60
VTEGFFSANC SDAPMIINTN NLQYFSQESG NGDDPNSENN TVSEPGEVIS LKRKLERVEE  120
QQTFKNDSAQ NPRKKPQASR ETHKNKRKAV SKSKKNQKIS HNSNEGEEIN GGQNTQSSSC  180
SSIDDESNGG MESSESKGKS RASRGAATDP QSLYARRRRE KINERLRILQ NLVPNGTKVD  240
ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAYNGMDI GHYQKMQQPT L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134148KKPQASRETHKNKRK
2216221RRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-40bHLH family protein